Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0357 ATGGACCTAATTTCTGCTCTTCCAGATGATATAGCGCGAGACTGTTTGATTCGTCTCTCCTACGAGCAATTCGCCGCCGCCTCATCCGTCTCCAAATCATGGAAGACGGAGATCCAGACGCCGGAGTTTCTCCGTCGGAGGAAGGCCACCGGCCACACTCAGAGACTCGTCGTCATGGCTCAGGCCCGAGTTGACTCGGAGAAACTCGGTTCCACTTCCACCATCGTAAAAGGGTCAATGAACCCGGTCTATCGCCTCACCGTCTTCGAACCGGAGACCAATCGCTGGGCCGAGATGCCTCCGATTCCCGGTCTATCCGCCGGGTTGCCCATGTTCTGCCAGCTGGCGGGTGTCGGGTACGACCTCGTGGTGATGGGCGGGTGGGACCCGGATTCATGGAAGGCCTCCAATTCGGTGTTTGTTTATAACTTCCTGTCGGCGGAGTGGCGCCGCGGCGCCGACATGCCCGGCGGGCCGCGCACGTTCTTCGCCTGCGCGTCGGATTCCCGGCGGTTCGTGTACGTCGCCGGCGGCCACAGCGAGGAGAAGAACGCGCTCCGGACGTCGTTCGCGTATGACGTGGCGGCGGACGCGTGGGTCCCGCTGGCTGACATGGCGAGGGAGCGAGACGAGTGCAAGGCGGTCTTCCACGGAGGCAAGTTCCGCGTGATCGGAGGGTACTGCACGGAGATGCAAGGGCGCTTCGAGACGAGCGCCGAGGCCTTCGACGTCGCCACGTGGAAGTGGGGCCCTGTGGAGGAGGGGTTCCTGGATTCCGCCGCGTGTCCGAGGACGTGCGTGGACGGCGGCGATGAGAGGGTGTACATGTGCGGGAGTGGCGGGGAGGTGACGGCGCTGCGGGACGCCACGTGGCAGCCGATGGCTAAGTTGGGAGAGGAGATGCGAAACGTTGCGTTTGTGGGCACGTGGGAAGGGAAGATGCTCTTGATTGGATCGTGTGGGTACGGCGAGCCGCACGTGGGAGTAGTGTTGGATCTGAAGGGTGGTTCTTGGAGGAAATTGGAGAGCCCAGGGAGTTATACAGGTCATGTCCAATCAGGATGTGTTTTGgaaatttga 1080 0.6148 MDLISALPDDIARDCLIRLSYEQFAAASSVSKSWKTEIQTPEFLRRRKATGHTQRLVVMAQARVDSEKLGSTSTIVKGSMNPVYRLTVFEPETNRWAEMPPIPGLSAGLPMFCQLAGVGYDLVVMGGWDPDSWKASNSVFVYNFLSAEWRRGADMPGGPRTFFACASDSRRFVYVAGGHSEEKNALRTSFAYDVAADAWVPLADMARERDECKAVFHGGKFRVIGGYCTEMQGRFETSAEAFDVATWKWGPVEEGFLDSAACPRTCVDGGDERVYMCGSGGEVTALRDATWQPMAKLGEEMRNVAFVGTWEGKMLLIGSCGYGEPHVGVVLDLKGGSWRKLESPGSYTGHVQSGCVLEI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0357 359 Gene3D - 30 354 IPR015915 GO:0005515
Sto9g0357 359 SMART kelc_smart 121 169 IPR006652 GO:0005515
Sto9g0357 359 SMART kelc_smart 172 219 IPR006652 GO:0005515
Sto9g0357 359 Pfam F-box domain 4 39 IPR001810 GO:0005515
Sto9g0357 359 PANTHER OS02G0208700 PROTEIN 1 359 IPR044595 GO:0080037|GO:2000762
Sto9g0357 359 Pfam Kelch motif 116 156 IPR006652 GO:0005515
Sto9g0357 359 Pfam Kelch motif 173 205 IPR006652 GO:0005515
Sto9g0357 359 SUPERFAMILY F-box domain 1 47 IPR036047 GO:0005515
Sto9g0357 359 SUPERFAMILY Kelch motif 82 341 IPR015915 GO:0005515
Sto9g0357 359 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0357 Sto-Chr9 3399214 3400293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0357 7 199 Miscellaneous Gene Families AT4G33900 25.481 4.05e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0357 - - gmx:100817910 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0357 9 3399214 3400293 Sto1g0217 1 1627037 1628137 CCT
Sto9g0357 9 3399214 3400293 Sto9g0357 9 3399214 3400293 ECH