Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0353 ATGCGAAAGCTCGCGCAAAGATCAGAAAGAGTAAAATCCGTGGATCTACATCCAACAGAACCATGGATTCTGGCAAGTTTATACTCAGGAACTGTCTGTATTTGGAACTACCAATCTCAGatCTGCATATCCAGGGATCGGACCCTAGAGACCATGGCCAAGTCTTTTGAGGTTACTGAGTTACCAGTTAGGTCTGCCAAGTTTGTTGCACGCAAACAGTGGGTGGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTTTTTGAGGCACATACAGATTACATTAGGTGTGTGGCAGTTCACCCTACCCTTCCTTATGTGCTGTCATCATCAGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAAGGCTGGATTTGCACTCAGATATTTGAGGGGCACTCTCATTATGTAATGCAAGTGACATTTAATCCTAAAGACACCAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCCAATTTTACATTGGATGCACATCAGAAAGGAGTGAATTGTGTTGATTACTTCACAGGCGGTGACAAACCTTATCTTATTACTGGTTCTGATGATCACACTGCCAAGGTATGGGACTATCAGACCAAAAGTTGTGTTCAGACCCTAGAAGGTCATACACACAATGTATCTGCTGTTTGCTTTCATCCTGAGCTTCCTATAATCATTACTGGTTCTGAGGATGGTACAGTACGCATATGGCATTCAACAACATATAGGCTTGAGAACACATTGAATTATGGTCTTGAAAGAGTTTGGGCTATTGGATACATGAAAGGTTCTCGGCGTCTGACTGTAAATGGAGAATCTCATTTAATGGAGCTGGTTGTGATTGGCTATGATGAAGGAACTATAATGGTCAAACTTGGTAGAGAGGAACCTGTTGCCAGCATGGATAACAGTGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAAACAGTCAATATAAAGAGCGTAGGAGCAGATTTGGAGGTGGCTGATGGAGAAAGGCTACCTTTGGCTGTTAAGGAGTTGGGCACTTGTGATCTCTACCCACAGtttttaaagCACAATCCAAATGGAAGATTTGTTGTTGTATGCGGAGATGGTGAGTATATTATATACACTGCATTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTGGAGTTTGTATGGTCTTCGGATGGTGAATATGCTGTCAGAGAAAGTACATCAAGGATTaaaatttttagtaaaaatttcCAGGAAAAGAAGAGTATTCGACCAACATTCTCAGCTGAACGTATATTTGGTGGTACTTTACTGGCAATGTGTTCAAATGATTTTATCTGCTTTTATGATTGGGCTGAATGCAGGCTGATCCGTCGCATTGATGTTAATGTGAAAAATCTGTACTGGGCTGATAGTGGTGATCTACTGACGATTGCAAGTGATACATCATTCTACATCCTGAAGTACAATCGTGATGTTGTTGCATCATATTTGGATGGTGGAAGACCTATAGATGAACAAGGTGTGGAAGATGCCTTTGATGTTCTTCATGAAATGAATGAACGAGTCAGGACTGGCATCTGGGTTGGGGATTGTTTTATCTACAACAATTCCTCCTGGAGGCTTAATTACTGTGTTGGTGGTGAGGTGACTACAATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATACCTTGCCAGCCAAAGTAGGGTTTATCTGATAGACAAAGAATTCAAtCACAACTTGCAATCTGGACTGCTCCCTCTAATTATTGAATCTTTGCTCTTTCAGCGTCATGGGATACACTCTGCTTTTAAGCTTGATTGA 1881 0.4088 MRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQICISRDRTLETMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYMKGSRRLTVNGESHLMELVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADLEVADGERLPLAVKELGTCDLYPQFLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSRIKIFSKNFQEKKSIRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLLTIASDTSFYILKYNRDVVASYLDGGRPIDEQGVEDAFDVLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNHNLQSGLLPLIIESLLFQRHGIHSAFKLD 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0353 626 Pfam Coatomer WD associated region 334 597 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Sto9g0353 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 269 IPR001680 GO:0005515
Sto9g0353 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 183 IPR001680 GO:0005515
Sto9g0353 626 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Sto9g0353 626 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Sto9g0353 626 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Sto9g0353 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 175 - -
Sto9g0353 626 PANTHER COATOMER 2 610 - -
Sto9g0353 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 130 IPR001680 GO:0005515
Sto9g0353 626 SMART WD40_4 221 260 IPR001680 GO:0005515
Sto9g0353 626 SMART WD40_4 177 218 IPR001680 GO:0005515
Sto9g0353 626 SMART WD40_4 1 36 IPR001680 GO:0005515
Sto9g0353 626 SMART WD40_4 91 130 IPR001680 GO:0005515
Sto9g0353 626 SMART WD40_4 134 174 IPR001680 GO:0005515
Sto9g0353 626 SMART WD40_4 49 88 IPR001680 GO:0005515
Sto9g0353 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 98 130 - -
Sto9g0353 626 SUPERFAMILY WD40 repeat-like 4 291 IPR036322 GO:0005515
Sto9g0353 626 PANTHER COATOMER SUBUNIT BETA'-1 2 610 - -
Sto9g0353 626 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 205 509 IPR011044 -
Sto9g0353 626 Gene3D - 4 304 IPR015943 GO:0005515
Sto9g0353 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 221 - -
Sto9g0353 626 CDD WD40 10 289 - -
Sto9g0353 626 Pfam WD domain, G-beta repeat 137 174 IPR001680 GO:0005515
Sto9g0353 626 Pfam WD domain, G-beta repeat 180 218 IPR001680 GO:0005515
Sto9g0353 626 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Sto9g0353 626 Pfam WD domain, G-beta repeat 223 259 IPR001680 GO:0005515
Sto9g0353 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 227 IPR001680 GO:0005515
Sto9g0353 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0353 Sto-Chr9 3351083 3358219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0353 63 382 Miscellaneous Gene Families AT5G08390 22.969 2.69e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0353 K17302 - gmx:100818132 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0353 9 3351083 3358219 Sto1g0225 1 1692528 1694965 CCT
Sto9g0353 9 3351083 3358219 Sto9g0353 9 3351083 3358219 ECH