Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0225 TTGAGCATAGAGGACTCTGGTTTAGCTTACAATGATATTGAACAGACTCCTTCTCTTCAAATTGAGCATGAATTTGTTCAGAACTCAGAAAGAGTGAAGTCTGTTGATTTGCATCCAAGTGAGCCATGGATTCTAGTGGGTTTGTATTCAGGAACTATTTGCATATGGAACTATGAGACCAAGACTGAAGAGAAGTCTTTCAAGGTCAGTGAATCACCAGTAAGATCAGCTAAGTTCATAACTCGCGAAAATTGGGTCGTCACTGCGACCGATGACAAATTTATCCGTGTCTACAACTACgaaaaaatggaaaaagtgGTGGAATTTGAGGCTCACAAAGATTACATCAGGAGTTTGGCTGTGCATCCTTCACTGCCATATGTGGTGTCAGCTTCTGATGACCATGTTTTGAAGGTATGGGATTGGAGAAAAGGTTGGGCTTGTGTTGAGACATTTGAAGGCCACACACATTATGTGATGCAAGTTGCATTAAACCCAAAGGATACATCTACTTTTGCAAGTGCATCCCTTGATGGCACCTTGAAgATTTGGGATCTTAACTCCTCGACTCCAAATTTTACCTTGGAAGGACACTTGAAGGGGGTGAATTGTGTTGATTACTTCACAATCAATGAGAAACAGTATTTGTTGAGTGGTTCTGATGATTACACTGCTAAGGTGTGGGATTATGATACTAAAAACTGTGTGAAAACACTAGAAGGACATGGAAACAATGTTACTGCAGTATGTGTCCATCCAGAGCTTCCTATAATAATAACAGCTTCAGAAGATAGCACTGTTAAAATATGGGATGCAATCACTTACAGACTAAAGACTACCTTGAACTATGGTCTTGAGAGAGTATGGAGTATTGGATACAAGAAAGGATCATATCAGCTTGCCTTTGGTTGTGACAGAGGATTCATTATGGTTAAGATAAATTGTTCTTCTCTGAATCTTCAAGATGCCAAACAAGACTAG 981 0.3904 LSIEDSGLAYNDIEQTPSLQIEHEFVQNSERVKSVDLHPSEPWILVGLYSGTICIWNYETKTEEKSFKVSESPVRSAKFITRENWVVTATDDKFIRVYNYEKMEKVVEFEAHKDYIRSLAVHPSLPYVVSASDDHVLKVWDWRKGWACVETFEGHTHYVMQVALNPKDTSTFASASLDGTLKIWDLNSSTPNFTLEGHLKGVNCVDYFTINEKQYLLSGSDDYTAKVWDYDTKNCVKTLEGHGNNVTAVCVHPELPIIITASEDSTVKIWDAITYRLKTTLNYGLERVWSIGYKKGSYQLAFGCDRGFIMVKINCSSLNLQDAKQD 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0225 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 238 IPR001680 GO:0005515
Sto1g0225 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 195 232 - -
Sto1g0225 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 239 271 - -
Sto1g0225 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 188 - -
Sto1g0225 326 SMART WD40_4 60 99 IPR001680 GO:0005515
Sto1g0225 326 SMART WD40_4 145 185 IPR001680 GO:0005515
Sto1g0225 326 SMART WD40_4 232 271 IPR001680 GO:0005515
Sto1g0225 326 SMART WD40_4 18 57 IPR001680 GO:0005515
Sto1g0225 326 SMART WD40_4 102 141 IPR001680 GO:0005515
Sto1g0225 326 SMART WD40_4 188 229 IPR001680 GO:0005515
Sto1g0225 326 Pfam WD domain, G-beta repeat 146 185 IPR001680 GO:0005515
Sto1g0225 326 Pfam WD domain, G-beta repeat 191 229 IPR001680 GO:0005515
Sto1g0225 326 Pfam WD domain, G-beta repeat 234 271 IPR001680 GO:0005515
Sto1g0225 326 Pfam WD domain, G-beta repeat 23 57 IPR001680 GO:0005515
Sto1g0225 326 Pfam WD domain, G-beta repeat 106 141 IPR001680 GO:0005515
Sto1g0225 326 PRINTS G protein beta WD-40 repeat signature 216 230 IPR020472 -
Sto1g0225 326 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Sto1g0225 326 PRINTS G protein beta WD-40 repeat signature 258 272 IPR020472 -
Sto1g0225 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 25 66 IPR001680 GO:0005515
Sto1g0225 326 Gene3D - 24 314 IPR015943 GO:0005515
Sto1g0225 326 SUPERFAMILY WD40 repeat-like 16 311 IPR036322 GO:0005515
Sto1g0225 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 280 IPR001680 GO:0005515
Sto1g0225 326 CDD WD40 31 291 - -
Sto1g0225 326 PANTHER COATOMER 18 314 - -
Sto1g0225 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 141 IPR001680 GO:0005515
Sto1g0225 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Sto1g0225 326 PANTHER COATOMER SUBUNIT BETA' 18 314 - -
Sto1g0225 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0225 Sto-Chr1 1692528 1694965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0225 98 303 Miscellaneous Gene Families AT5G08390 27.053 1.26e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0225 - K17302 gmx:100807969 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0353 9 3351083 3358219 Sto1g0225 1 1692528 1694965 CCT
Sto1g0225 1 1692528 1694965 Sto1g0225 1 1692528 1694965 ECH