Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4530 ATGGCACTAGTGGCCAATGTTGGTCTGCGTCTTGTGAGAGAAAGTGAAAATGGCCAAATTTCTGGAGATGTATTAGTTTATTGGAATCCTGGATTACATTTTGGAGACATACATATACTACGAGCCACATATGTGAAGGGGCTAGAATCTTTTGTTGGCCATAGCAGATATGCCATATTCTTCCCTTCTCCTTTACTTTATCGGAACCGTTTCGTCAAAGGCGCGCATTCCCTTCATCAACCCATACAAAAGAGACCCATTACTCCATTTGGCTGGAAAAATTCCAAGTCCATGAAACCAGATAAGGAGGTCACAGATCATAAAGAGTATACAAGGGACATTGTTGCGAAAATATACAGAATGCTTAAGTATTCGACTTGGGATTCTGCTCAAGAAGAgcttgagaagcttcccatAAGATGGGATTCTTACACGGTCAATCAAATCCTGAAAACTCACCCACCTATGGAgaaagcctggttgttcttcAATTGGGCTTCTCGGCTAAGAGGGTTTAAGCATGACCAGTATACTTACACAACaatgttggatatttttggAGAAGCTGGGAGAATTTCGTCAATGAAGTATGTTTTCCAGCAGATGCTAGAAAAGGCGATAAAGATTGATTCTGTTACATACACTTCGCTTATGCATTGGCTATCTAATTCAGGGAATGTTGATGAGGCAATAAAGGCATGGGAAGAAATGAAATCTAAGGGGTGTACCCCAACTGTTGTATCTTATACTGCATATATGAAGATTCTATTCAACAATGACAAAGTAAAGGAGGCTACTAATGTCTTCAAGGAGATGCTTCAGTCTGAATGTACTCCTAATTGCTACACTTACACAATCTTAATGGAGCATCTTATTGGGTCTGAAAAGTGCAAGGAAGCCCTCGATGTTTTTGAAAAGATGCAAGAGGCTGGGGTGCAACCTGATAAAGCTGCATGTAATATATTGGTTCAAAAGTGTTCTAAAGTTGGTGGGACAGCGGCCATGAACCAATTTCTTCAGTATATGAAGGAAAACCGTCTTGTTCTTCGGTACACTGTTTTTGTGGAAGCATTGGAAGCTTTAAAACTTGCTGGTGAGAGTGATGCCCTTCTCAGGGAAGTTCATCCTCACTTTTCTGTTGACTATAACATCCGGAAGAATGCAAATTACTGCACAAAAGTAGTTGCAGATTCTCCTTCCAATATAGATGAAAGACTTCTATCTGTTTTATTGAGGAAGAGAAATCTGGTTGCTATTGACCATTTACTAGCAATGATGACGGATAAGAAAATACCTTTAAACAAAGAGGCTTTATCAACCATCATTGATATAAATTGCAGTCAGTACAGACCAGATGGTGCCTTATTGGCTTTCGAGTACAGCGTGAAATTGGGCATAAGCCTTGACAGAGCAAAATATCTAGCCTTGGTGGGCTTGTTGATCAgatcaaatttgttttcaaagatCTTGGAAATTGTAGAGGAAATGACTAGAGCTGGACATTCTCTTGGAATCTATTTAGCTTCAAATTTACTCTATAGGCTTGGTCGCGCTCGGCAGCCTACATATGCTGCAAAAATTTTCAACTTATTACCTGATAACCATAAGTGTACTGCCACCTACACTGCTTTAATCAGCGCTTACTTCTCTGCTGGAAGAGTTAATAAAGCACTAGGGATTTATGAAAACATGCGCAGAGAGGGAGTTTCTCCTGCATTAGGCACTTACAATGTGCTACTAGATGGTATGGAAAGAAATGGTAAATCTTCTGAAGCAGAATTGTTTAGGAAGGAAAGGAAGACCCTACTTGCTCGAAATTCGCTATTGAAATATACCACACGTCCTCCGCCTCCCACTGGTTTTAGCGGGGCCCACTCTCACCACGCGCGAAGAACGGAGTATAAAACCCAACGCGCTTTTCCggttctcttctccctctccatTACTCACAGCCATTCAAACGCTaacttctcttttctctctcacaaaaagaagggaaaaaaattaaaaaatcggAATCGGAAGCAGAAACGACGATTCTTATCAACAATGGCGACGGATCCAAACGAAGCCTCCAAGGTCATCTCTAAAGCAATTACCGAACCCTCAGTGTACCTCGACGACGCGGAGGAACTCAAGAGAGTCTTCAGCCGCTTCGACGTCAACGGCGACGGCAAGATCTCCATCACCGAGCTCGACAACGTTCTCAAGACCCTGGGATCCAGCGTTCCCCAATCGCAGCTCAAGAATGTCATGGAGGACCTCGACACCGACCGCGACGGCTTCATCAACCTCTCGGAGTTCGCCGAGTTCTGCCGCTCCAACGCCACCGACGGCGGCTCGTCGGAGCTCCGAGACGCCTTCGATCTCTACGATCAGGACAAGAATGGCCTCATCTCCGCCTCCGAACTCCACCAGGTGCTCAACCGCTTGGGATTGAGGTGCTCCGTCGATGAATGCCGCGACATGATCAAATCCGTCGATGCCGACGGCGACGGCTCCGTCAACTTCGAGGAGTTCAAGAAGATGATGACCAATAATCCGATGAATGCCTCCGTTAATCCGGATTACTCGGTGGTCAAGGAAGTCTGGCAACAGAACATCATCATCGAGTCGGATTCTTTGCTTGGCATTAGCTTGATCAAAGATGGTGTGGATAGCTCTCACCCGTTAAACCCAATTGTCTCTGTCATTCGTAGTCTTGCTGCTAAAGTTGGGAATGTGAGCTTTAATCACTCTTTTAGGGAGGGCAATCGTGTTGCCAATGGTCGCTGTCCTCTCCATTGGAAAATTCATGGCTGTCACTATGCCCACCACGCAATACTCACACTTGGGATACTGGTTTTCTCTGAATCCTGGTCGTTTAACATCAAGGAGCATGTGATTATAATTGTGTTCGCTAATTGTGGGGTTTCATCGACTTCCGAAAATCCAGGCGGAGTTGATGGTTCTGAAGATGTGGTTATGGTGGCCTCTGAAAGAGAGGGTTATGGGTTGATGACAAGAAGGCCAGGACCAAGAAGAAGACCTTGGTCGAGATGTGTTCTtgagaagagagggaaggagCTTTATGATATCTTCTAG 3084 0.4219 MALVANVGLRLVRESENGQISGDVLVYWNPGLHFGDIHILRATYVKGLESFVGHSRYAIFFPSPLLYRNRFVKGAHSLHQPIQKRPITPFGWKNSKSMKPDKEVTDHKEYTRDIVAKIYRMLKYSTWDSAQEELEKLPIRWDSYTVNQILKTHPPMEKAWLFFNWASRLRGFKHDQYTYTTMLDIFGEAGRISSMKYVFQQMLEKAIKIDSVTYTSLMHWLSNSGNVDEAIKAWEEMKSKGCTPTVVSYTAYMKILFNNDKVKEATNVFKEMLQSECTPNCYTYTILMEHLIGSEKCKEALDVFEKMQEAGVQPDKAACNILVQKCSKVGGTAAMNQFLQYMKENRLVLRYTVFVEALEALKLAGESDALLREVHPHFSVDYNIRKNANYCTKVVADSPSNIDERLLSVLLRKRNLVAIDHLLAMMTDKKIPLNKEALSTIIDINCSQYRPDGALLAFEYSVKLGISLDRAKYLALVGLLIRSNLFSKILEIVEEMTRAGHSLGIYLASNLLYRLGRARQPTYAAKIFNLLPDNHKCTATYTALISAYFSAGRVNKALGIYENMRREGVSPALGTYNVLLDGMERNGKSSEAELFRKERKTLLARNSLLKYTTRPPPPTGFSGAHSHHARRTEYKTQRAFPVLFSLSITHSHSNANFSFLSHKKKGKKLKNRNRKQKRRFLSTMATDPNEASKVISKAITEPSVYLDDAEELKRVFSRFDVNGDGKISITELDNVLKTLGSSVPQSQLKNVMEDLDTDRDGFINLSEFAEFCRSNATDGGSSELRDAFDLYDQDKNGLISASELHQVLNRLGLRCSVDECRDMIKSVDADGDGSVNFEEFKKMMTNNPMNASVNPDYSVVKEVWQQNIIIESDSLLGISLIKDGVDSSHPLNPIVSVIRSLAAKVGNVSFNHSFREGNRVANGRCPLHWKIHGCHYAHHAILTLGILVFSESWSFNIKEHVIIIVFANCGVSSTSENPGGVDGSEDVVMVASEREGYGLMTRRPGPRRRPWSRCVLEKRGKELYDIF 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4530 1027 ProSitePatterns EF-hand calcium-binding domain. 828 840 IPR018247 -
Sto8g4530 1027 TIGRFAM PPR: pentatricopeptide repeat domain 212 246 IPR002885 -
Sto8g4530 1027 TIGRFAM PPR: pentatricopeptide repeat domain 177 210 IPR002885 -
Sto8g4530 1027 TIGRFAM PPR: pentatricopeptide repeat domain 540 571 IPR002885 -
Sto8g4530 1027 TIGRFAM PPR: pentatricopeptide repeat domain 247 281 IPR002885 -
Sto8g4530 1027 TIGRFAM PPR: pentatricopeptide repeat domain 282 315 IPR002885 -
Sto8g4530 1027 ProSiteProfiles EF-hand calcium-binding domain profile. 815 850 IPR002048 GO:0005509
Sto8g4530 1027 CDD EFh 783 845 IPR002048 GO:0005509
Sto8g4530 1027 ProSitePatterns EF-hand calcium-binding domain. 756 768 IPR018247 -
Sto8g4530 1027 Gene3D - 630 780 - -
Sto8g4530 1027 ProSiteProfiles EF-hand calcium-binding domain profile. 743 778 IPR002048 GO:0005509
Sto8g4530 1027 ProSitePatterns EF-hand calcium-binding domain. 720 732 IPR018247 -
Sto8g4530 1027 Gene3D Tetratricopeptide repeat domain 402 508 IPR011990 GO:0005515
Sto8g4530 1027 Gene3D Tetratricopeptide repeat domain 509 611 IPR011990 GO:0005515
Sto8g4530 1027 ProSiteProfiles EF-hand calcium-binding domain profile. 707 742 IPR002048 GO:0005509
Sto8g4530 1027 PANTHER OS10G0358700 PROTEIN 97 604 - -
Sto8g4530 1027 ProSiteProfiles EF-hand calcium-binding domain profile. 779 814 IPR002048 GO:0005509
Sto8g4530 1027 SUPERFAMILY TPR-like 124 361 IPR011990 GO:0005515
Sto8g4530 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Sto8g4530 1027 ProSitePatterns EF-hand calcium-binding domain. 792 804 IPR018247 -
Sto8g4530 1027 SUPERFAMILY EF-hand 708 847 IPR011992 -
Sto8g4530 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Sto8g4530 1027 Pfam PPR repeat family 176 221 IPR002885 -
Sto8g4530 1027 Pfam PPR repeat family 244 290 IPR002885 -
Sto8g4530 1027 Pfam PPR repeat family 537 583 IPR002885 -
Sto8g4530 1027 Pfam RNA dependent RNA polymerase 17 63 IPR007855 GO:0003968
Sto8g4530 1027 Gene3D Tetratricopeptide repeat domain 275 348 IPR011990 GO:0005515
Sto8g4530 1027 Gene3D Tetratricopeptide repeat domain 121 274 IPR011990 GO:0005515
Sto8g4530 1027 Gene3D - 781 848 - -
Sto8g4530 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Sto8g4530 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Sto8g4530 1027 SMART efh_1 747 775 IPR002048 GO:0005509
Sto8g4530 1027 SMART efh_1 783 811 IPR002048 GO:0005509
Sto8g4530 1027 SMART efh_1 819 847 IPR002048 GO:0005509
Sto8g4530 1027 SMART efh_1 711 739 IPR002048 GO:0005509
Sto8g4530 1027 CDD RNase_H_like 864 921 IPR044730 -
Sto8g4530 1027 Pfam EF-hand domain pair 783 844 IPR002048 GO:0005509
Sto8g4530 1027 Pfam EF-hand domain pair 710 773 IPR002048 GO:0005509
Sto8g4530 1027 CDD EFh 711 771 IPR002048 GO:0005509
Sto8g4530 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Sto8g4530 1027 Pfam Reverse transcriptase-like 866 922 IPR002156 GO:0003676|GO:0004523
Sto8g4530 1027 Pfam Pentatricopeptide repeat domain 303 347 IPR002885 -
Sto8g4530 1027 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 97 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4530 Sto-Chr8 47990560 48013779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4530 700 845 EF-hand Containing Proteins AT1G18210 63.014 2.91e-58 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4530 - - pvu:PHAVU_002G329700g 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0109 4 882046 885012 Sto8g4530 8 47990560 48013779 ECH
Sto8g4530 8 47990560 48013779 Sto8g4530 8 47990560 48013779 ECH