Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0109 ATGAAGGCGAATTCGTCTAATTGCATTAGGTGGGGTGGTTGGGATCCGCCCAATCATGATAGAGTGAAGTGCAATGTGGACGGTTCTTATTTCGATTCGACTAGAACGACTGCATGTGGTGGTGTCGCCCGCGATGTTTCTAGTAACTTCCTCTTTAGTTTTTGTCATCATATTGGTTGTTGCGAAATCATTTGGGCTGAGCTTAGAGGCATCGTTGATGGTTTGGAGATGCTTTGGGACAAAGGTTTTCGAAAGGTTTTGATTGAGTGTGATTCTGAGGTTGCTTTGGAGCTTGTTTCGATTGGTGTTGACAATAATCGCCCATGTTCTGCACTGGTGCAACGGATTAGAAGCTTGTTGGATCGAAATTGGGACACTGAGTTGGTTCATGTCTTTCGAGAAACCAATCAAGTTGCGGATTTTATGGCAAAGTTGAGCCACACCCTCTCAGAAGGCATTAATGTCTTTGACTTCCTTCATGTGGATCTTGGCCCTATTTTTGCTGCTGATCTTAATAGTCCTTTGGTGCCACGTCTTTGTATCTCGCCGTCGGAGCTCCAGCGCCGGCTGGCGAAGATGGCGGCGGGCGGCGGGGAGGTGTTGACGAAGGAAGGTGCAGAAATGGCAATAGAGGCATTGGATTCGGACGGTGATGGGTTAGTGAgtttggaggatttgatgggtttGGTTGAAGGAGGAGATGAGGAAGAAAAGTTGAAGGATTTGAGAGAAGCTTTCAAGATGTATGATGAAGAAGGGTGTGGGTTCATAACGCCTTTGAACTTGAAGAGGATGCTTTGCAAGTTGGGCGAATCAAAGACTATTGATGAATGCAAATTCATGATCACTGCCTTTGATTTGAATGGGGATGGCATGCTTAACTTTGAAGAGTTCTTAATTATGATGCActag 912 0.443 MKANSSNCIRWGGWDPPNHDRVKCNVDGSYFDSTRTTACGGVARDVSSNFLFSFCHHIGCCEIIWAELRGIVDGLEMLWDKGFRKVLIECDSEVALELVSIGVDNNRPCSALVQRIRSLLDRNWDTELVHVFRETNQVADFMAKLSHTLSEGINVFDFLHVDLGPIFAADLNSPLVPRLCISPSELQRRLAKMAAGGGEVLTKEGAEMAIEALDSDGDGLVSLEDLMGLVEGGDEEEKLKDLREAFKMYDEEGCGFITPLNLKRMLCKLGESKTIDECKFMITAFDLNGDGMLNFEEFLIMMH 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0109 303 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 181 303 - -
Sto4g0109 303 CDD EFh 241 303 IPR002048 GO:0005509
Sto4g0109 303 SUPERFAMILY EF-hand 181 302 IPR011992 -
Sto4g0109 303 ProSiteProfiles EF-hand calcium-binding domain profile. 237 272 IPR002048 GO:0005509
Sto4g0109 303 ProSiteProfiles EF-hand calcium-binding domain profile. 201 236 IPR002048 GO:0005509
Sto4g0109 303 Pfam EF-hand domain pair 180 231 IPR002048 GO:0005509
Sto4g0109 303 ProSitePatterns EF-hand calcium-binding domain. 286 298 IPR018247 -
Sto4g0109 303 Pfam EF-hand domain pair 240 302 IPR002048 GO:0005509
Sto4g0109 303 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 181 303 - -
Sto4g0109 303 CDD RNase_H_like 24 144 IPR044730 -
Sto4g0109 303 Gene3D - 19 147 IPR036397 GO:0003676
Sto4g0109 303 Pfam Reverse transcriptase-like 25 144 IPR002156 GO:0003676|GO:0004523
Sto4g0109 303 Gene3D - 177 303 - -
Sto4g0109 303 ProSiteProfiles EF-hand calcium-binding domain profile. 273 303 IPR002048 GO:0005509
Sto4g0109 303 SUPERFAMILY Ribonuclease H-like 21 147 IPR012337 -
Sto4g0109 303 ProSitePatterns EF-hand calcium-binding domain. 214 226 IPR018247 -
Sto4g0109 303 SMART efh_1 241 269 IPR002048 GO:0005509
Sto4g0109 303 SMART efh_1 277 303 IPR002048 GO:0005509
Sto4g0109 303 SMART efh_1 205 233 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0109 Sto-Chr4 882046 885012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0109 181 303 EF-hand Containing Proteins AT1G76650 48.780 8.05e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0109 K13448 - gmx:100816563 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0109 4 882046 885012 Sto8g4530 8 47990560 48013779 ECH
Sto4g0109 4 882046 885012 Sto4g0109 4 882046 885012 ECH