Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2475 ATGGGTTCTCGTTCCAATTCCAAAGTGAGCAATAGCAGTTTTGATTTCTCCTTCAAGGTTTTGTTGATTGGGGATTCTGGGGTTGGCAAGAGCAGTCTTCTTCTTAGCTTCACCTCCAACTCTCTTCATGATCTCTCCCCCACTATTGGTGTGGACTTCAAAATCAAGCTCCTTACAATTGGTGGTAAAAGAGTGAAACTCACTATTTGGGATACAGCGGGACAGGAGAGATTCGGAACGGTAATAAGCTCTTACTACAGGGGTGCACATGGGATCATTCTTGtatatgaTGTGACTCGGCGTGAAACATTTACGAACTTGGTGGATATATGGGCGAAAGAAGTTGAACTCTACAGCACATTCCCTGAGTGCATCAAAATTCTAGTTGGGAATAAAGTGGATAAGGATAGTGAAAGAGCTGTAACCAAGGAAGAGGGTATGGCTCTTGCGCAGGAACATAGATGCTTGTTCCTCGAGTGTAGCGCCAAAACTCGAGAAAATGTTCAGCAATGCTTCAATGATCTAATCTTGAAGATCTTAGAGGTTCCGAGTTTACGGGAAAAAGGGTCGGTAGTAGTGAAGAGACAGAAGCAAAAGCACCTATACGAGACATCTCGAGGCGCCGGCGATTGTTGTTCTTATTGA 645 0.4388 MGSRSNSKVSNSSFDFSFKVLLIGDSGVGKSSLLLSFTSNSLHDLSPTIGVDFKIKLLTIGGKRVKLTIWDTAGQERFGTVISSYYRGAHGIILVYDVTRRETFTNLVDIWAKEVELYSTFPECIKILVGNKVDKDSERAVTKEEGMALAQEHRCLFLECSAKTRENVQQCFNDLILKILEVPSLREKGSVVVKRQKQKHLYETSRGAGDCCSY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2475 214 TIGRFAM small_GTP: small GTP-binding protein domain 18 173 IPR005225 GO:0005525
Sto8g2475 214 ProSiteProfiles small GTPase Rho family profile. 11 180 - -
Sto8g2475 214 SMART ran_sub_2 23 214 - -
Sto8g2475 214 Gene3D - 9 208 IPR027417 -
Sto8g2475 214 Pfam Ras family 19 180 IPR001806 GO:0003924|GO:0005525
Sto8g2475 214 PRINTS Transforming protein P21 ras signature 18 39 - -
Sto8g2475 214 PRINTS Transforming protein P21 ras signature 40 56 - -
Sto8g2475 214 PRINTS Transforming protein P21 ras signature 58 80 - -
Sto8g2475 214 PRINTS Transforming protein P21 ras signature 122 135 - -
Sto8g2475 214 PRINTS Transforming protein P21 ras signature 157 179 - -
Sto8g2475 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 195 IPR027417 -
Sto8g2475 214 SMART ras_sub_4 15 182 - -
Sto8g2475 214 ProSiteProfiles small GTPase Ras family profile. 10 214 IPR001806 GO:0003924|GO:0005525
Sto8g2475 214 SMART rho_sub_3 20 182 IPR001806 GO:0003924|GO:0005525
Sto8g2475 214 SMART rab_sub_5 18 182 - -
Sto8g2475 214 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 213 - -
Sto8g2475 214 ProSiteProfiles small GTPase Rab1 family profile. 13 212 - -
Sto8g2475 214 CDD Rab18 18 179 - -
Sto8g2475 214 PANTHER DRAB5-RELATED 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2475 Sto-Chr8 17083084 17085685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2475 17 172 EF-hand Containing Proteins AT5G27540 27.329 1.17e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2475 K07910 - gmx:100500172 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2475 8 17083084 17085685 Sto13g3173 13 35867796 35869618 CCT
Sto8g2475 8 17083084 17085685 Sto8g2475 8 17083084 17085685 ECH