Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3173 ATGAGTTCATCCTCAGGGTCAGGTTCAGGGCAGAGTAGTGGCTATGATCTCTCTTTCAAGATCTTGTTGATTGGCGACTCTGGTGTGGGAAAAAGTAGTCTCCTCGTTACCTTCATTTCCAGCTCCCATCAAGATCTCGCTCCCACCATTGGCGTTGATTTTAAGATCAAGCTGCTCACTGTAGGTGgaaagaaattgaaattaaCAATTTGGGACACTGCTGGGCAGGAAAGGTTCAGAACTTTAACAAGTTCATACTATAGAGGAGCACAAGGAATCATTCTGGTTTATGATGTTACAAGGAGAGACACATTTACGAACTTATCAGAAGTTTGGTCTAAAGAAGTTGAACTCTATTCAACTAATCAGAATTGTGTGAAGATGCTAGTTGGAAATAAAGTTGACAGAGATTCTGAAAGGGTTGTGAGCAGAGAAGAGGGTTTAGGTCTTGCCAAAGAGTTGGGGTCTTTGTTTCTAGAATGCAGTGCGAAAACTCGAGAAAACGTGGAGCAATGCTTTGAGGAACTTGCTCTAAAGATAATGGAAGTTCCTAGTCTGTTGGAAGAAGGATCAACCGCAGTAAAAAGGAATATTTTGAAGCAGAAACAGGAACCCCAAGCATCCCAAAACGGTGCTTGTTGCTCTTAA 648 0.4136 MSSSSGSGSGQSSGYDLSFKILLIGDSGVGKSSLLVTFISSSHQDLAPTIGVDFKIKLLTVGGKKLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRDTFTNLSEVWSKEVELYSTNQNCVKMLVGNKVDRDSERVVSREEGLGLAKELGSLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKQEPQASQNGACCS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3173 215 ProSiteProfiles small GTPase Ras family profile. 10 215 IPR001806 GO:0003924|GO:0005525
Sto13g3173 215 PANTHER SMALL MONOMERIC GTPASE-RELATED 7 215 - -
Sto13g3173 215 ProSiteProfiles small GTPase Rho family profile. 12 181 - -
Sto13g3173 215 ProSiteProfiles small GTPase Rab1 family profile. 14 215 - -
Sto13g3173 215 CDD Rab18 19 180 - -
Sto13g3173 215 SMART rab_sub_5 19 183 - -
Sto13g3173 215 PRINTS Transforming protein P21 ras signature 19 40 - -
Sto13g3173 215 PRINTS Transforming protein P21 ras signature 41 57 - -
Sto13g3173 215 PRINTS Transforming protein P21 ras signature 59 81 - -
Sto13g3173 215 PRINTS Transforming protein P21 ras signature 123 136 - -
Sto13g3173 215 PRINTS Transforming protein P21 ras signature 158 180 - -
Sto13g3173 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 199 IPR027417 -
Sto13g3173 215 TIGRFAM small_GTP: small GTP-binding protein domain 19 175 IPR005225 GO:0005525
Sto13g3173 215 SMART ran_sub_2 24 213 - -
Sto13g3173 215 Gene3D - 12 214 IPR027417 -
Sto13g3173 215 ProSiteProfiles small GTPase Arf family profile. 12 181 - -
Sto13g3173 215 SMART ras_sub_4 16 183 - -
Sto13g3173 215 SMART rho_sub_3 21 183 IPR001806 GO:0003924|GO:0005525
Sto13g3173 215 SMART arf_sub_2 1 184 - -
Sto13g3173 215 PANTHER DRAB5-RELATED 7 215 - -
Sto13g3173 215 Pfam Ras family 20 181 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3173 Sto-Chr13 35867796 35869618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3173 6 200 EF-hand Containing Proteins AT5G27540 26.238 3.29e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3173 K07910 - gmx:100818801 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2475 8 17083084 17085685 Sto13g3173 13 35867796 35869618 CCT
Sto13g3173 13 35867796 35869618 Sto13g3173 13 35867796 35869618 ECH