Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1612 ATGTTCTTCGAGGTGCTGGATATCGCCGGCGTTTTCTCTCGTCACCGCCGGCGCATATCTGACCTTCCGTCAATTGCACACGCCAACGCACGGCGGCGCAATCATCTCCATGGAACCTTGCTTCTTTCTTACGTTACAGCCTCGCTCTTGAATCCCGAGAGCGAATATGAAGAAAAGGTTCCTTTAAGTGGTGGGAAACaagcGAAGAACGATAAGGAATCCAAAACAAAATGCTGCAACCCTGTCAAGAAACCGGGACCGGTGACAATGGATCATGTTCTACTGGCATCCAAGGAAAGCAGGGAAGGAAGAGAGCTAAGGATCCGTAGTCTTTTCTGTTTCTTTGATACGGCAAACGCTGGGATTATAGATTATGCCCAGATTGATGCTGGCCTCTCTGCGCTTCGTGTTCCAGCTGAAGCTAAGTATGCCAAGGATTTTTTAAATGCTTGTGATGCTAATAAAGATGGGAGAATTGATTATCAAGAGTTCAAAAGGTACATGGATAACCGAGAGATAGAGCTTTACAGCATATTTCAAGCCATTGATATTAAACATAATGGACACATTCTGCCAGAAGAGCTCAGGGAGGCGTTAGTAAGAGCAGGGATTCAAATTGATGACAAGGAATTTTCCCTTTTTGTGGAGCGTATTGACAAGGATAATAATGGGGTTATAACATTCGAAGAATGGAGAGATTTTCTTCTGCTTTATCCTCATGAAGCAACTATTGAAAACATTTACCATTATTTGGAGCTTGTATGTCTTGTTGATATTGGGGAACAAACAGTTATTCCCGCAGATATCAGTAAGCACATTCATGCTAGTAGATATCTGATAGCAGGAGGAATAGCAGGAGCAGCATCACGGACAGCAACTGCACCTCTTGATCGTTTAAAAGTTGTTTTGCAAATCCAAACAACACGAGCTCATATAATGCCTGCACTTAAACATATATGGAGAGAAGGTGGTTTCCTGGGATTTTTCCGGGGAAATGGCTTAAATGTCCTCAAGGTGGCCCCTGAGAGTGCTATAAGATTTTATACTTATGAGATGCTAAAGACATGCATTATGAATGCTAAACAAGATGAGGAAAACTCTGATATTGGAACTTTGGGGCTGGTAGTCTCTAGTGGTATGGCTGGCGCTATCGCTCAAACTGCAATATACCCAGTGGACCTTGTTAAAACACGAGTACAAACCTATGCTTGTCAAGGTGAAAGAATTCCTAGTCTTGGAACCCTCTCTAGAAACATATGGGTTCAGGAAGGACCCCGTGCATTCTGTAGGGGATTGTTTCCTTCCCTTCTTGGCATTGTCCCTTATGCTGGCATAGATATGGCGGCATATGAAACTTTAAAAGATGTCTCCAAGAAGTATAATCTTCACGATGGAGAACCTGGTCCTCTTGTACAACTTGGATGTGCGACGGTGGCCGGAGCCCTTGGAGCATCATGTGTATATCCGTTGCAGGTCGTCAGAACAAGAATGCAGGCTCAACGCTCCAATTCTAGCACTACATATAAGGGAATGACGGATGTATTCAGGAGAACTTTTGAACATGAAGGGTTTAGGGGATTCTACAAGGGAATATTTCCCAACCTGCTCAAAGTTGTTCCATCCGCAAGTATCACTTATATGCTTTACGACACCTTGAAAAAGGGTTTGGCATTGGAGTGA 1680 0.4345 MFFEVLDIAGVFSRHRRRISDLPSIAHANARRRNHLHGTLLLSYVTASLLNPESEYEEKVPLSGGKQAKNDKESKTKCCNPVKKPGPVTMDHVLLASKESREGRELRIRSLFCFFDTANAGIIDYAQIDAGLSALRVPAEAKYAKDFLNACDANKDGRIDYQEFKRYMDNREIELYSIFQAIDIKHNGHILPEELREALVRAGIQIDDKEFSLFVERIDKDNNGVITFEEWRDFLLLYPHEATIENIYHYLELVCLVDIGEQTVIPADISKHIHASRYLIAGGIAGAASRTATAPLDRLKVVLQIQTTRAHIMPALKHIWREGGFLGFFRGNGLNVLKVAPESAIRFYTYEMLKTCIMNAKQDEENSDIGTLGLVVSSGMAGAIAQTAIYPVDLVKTRVQTYACQGERIPSLGTLSRNIWVQEGPRAFCRGLFPSLLGIVPYAGIDMAAYETLKDVSKKYNLHDGEPGPLVQLGCATVAGALGASCVYPLQVVRTRMQAQRSNSSTTYKGMTDVFRRTFEHEGFRGFYKGIFPNLLKVVPSASITYMLYDTLKKGLALE 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1612 559 SUPERFAMILY Mitochondrial carrier 272 552 IPR023395 -
Sto8g1612 559 Gene3D - 62 174 - -
Sto8g1612 559 ProSiteProfiles EF-hand calcium-binding domain profile. 139 174 IPR002048 GO:0005509
Sto8g1612 559 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 115 556 - -
Sto8g1612 559 CDD EFh 174 235 IPR002048 GO:0005509
Sto8g1612 559 ProSitePatterns EF-hand calcium-binding domain. 219 231 IPR018247 -
Sto8g1612 559 ProSitePatterns EF-hand calcium-binding domain. 152 164 IPR018247 -
Sto8g1612 559 Pfam Mitochondrial carrier protein 272 359 IPR018108 -
Sto8g1612 559 Pfam Mitochondrial carrier protein 468 556 IPR018108 -
Sto8g1612 559 Pfam Mitochondrial carrier protein 369 460 IPR018108 -
Sto8g1612 559 ProSiteProfiles EF-hand calcium-binding domain profile. 178 205 IPR002048 GO:0005509
Sto8g1612 559 Pfam EF hand 145 166 IPR002048 GO:0005509
Sto8g1612 559 Gene3D Mitochondrial carrier domain 269 557 IPR023395 -
Sto8g1612 559 SUPERFAMILY EF-hand 102 273 IPR011992 -
Sto8g1612 559 PRINTS Mitochondrial carrier protein signature 278 291 IPR002067 GO:0055085
Sto8g1612 559 PRINTS Mitochondrial carrier protein signature 291 305 IPR002067 GO:0055085
Sto8g1612 559 PRINTS Mitochondrial carrier protein signature 331 351 IPR002067 GO:0055085
Sto8g1612 559 PRINTS Mitochondrial carrier protein signature 384 402 IPR002067 GO:0055085
Sto8g1612 559 PRINTS Mitochondrial carrier protein signature 429 447 IPR002067 GO:0055085
Sto8g1612 559 PRINTS Mitochondrial carrier protein signature 476 498 IPR002067 GO:0055085
Sto8g1612 559 ProSiteProfiles EF-hand calcium-binding domain profile. 206 241 IPR002048 GO:0005509
Sto8g1612 559 SMART efh_1 210 238 IPR002048 GO:0005509
Sto8g1612 559 SMART efh_1 143 171 IPR002048 GO:0005509
Sto8g1612 559 SMART efh_1 174 202 IPR002048 GO:0005509
Sto8g1612 559 SMART efh_1 107 135 IPR002048 GO:0005509
Sto8g1612 559 Pfam EF-hand domain pair 174 233 IPR002048 GO:0005509
Sto8g1612 559 ProSiteProfiles Solute carrier (Solcar) repeat profile. 273 356 IPR018108 -
Sto8g1612 559 ProSiteProfiles Solute carrier (Solcar) repeat profile. 467 555 IPR018108 -
Sto8g1612 559 ProSiteProfiles Solute carrier (Solcar) repeat profile. 369 456 IPR018108 -
Sto8g1612 559 Gene3D - 186 261 - -
Sto8g1612 559 PANTHER SOLUTE CARRIER FAMILY 25 115 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1612 Sto-Chr8 10355350 10358190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1612 72 559 EF-hand Containing Proteins AT5G51050 66.871 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1612 K14684 - tcc:18601151 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1612 8 10355350 10358190 Sto8g1612 8 10355350 10358190 ECH
Sto8g1612 8 10355350 10358190 Sto13g0674 13 6326194 6329252 ECH