Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1302 ATGGCCTTCCAAAGCCAtaatcttcttctttcattCATCATAATTTCTTTTGTTGCTTGTTCCCTTCAAGAGGACCCACTTGATGATATGTATGTTGGTAATTCACCCTCTAATGTTGACGATGGTGGGACATCGAAGAGCTTAATCATTAAGCAACGACccacaaataatattttgaggTTAAATAGGTTTGTTATGTTGGAtgccacttcttcttcttcttcagctaCAAAGCTTAATGTCAACGATTATGGAGCTAAAGGGGATGGCAAAACCGATGACACTCaggcaTTTAAGAAGGCTTGGAAAGAAGCATGTTCTTCTGGGGGAGCAGTGATTCTAGCTGTGCCTCAGAACAATTATCTACTTAAGCCTATCACATTCTCTGGACCATGCAAATCTCAGATTACTATGcagattggTGGAAGCATTGAAGCTTCAGAGGATCGTTCAGAGTACAGCGAAGACACCCAACATTGGGTTATGTTCGAGAGTGTTGAGAAACTAACTGTTGAAGGAGGTGGAACCATCAATGGGAATGGAAACACATGGTGGAAAAACTCTTGCAAAAAGAATCCTAAACTAGTATGTATTGATCCAAATCAGGCTGTGACATTCTACAAGTGCAAGAATTTGATAGTGGAGAATTTGACGATAAAGAATGGCCAACAAATCAACGTTAATATTGAGGAATCGATGGATGTCAAAGTTTCTGGTGTCACAGTGAAAGCACCAGGAGATAGCCCTAATACCGATGGAATTCATATCACCAATACTAAGAACATCAAAATCTTGAAAACTCTTATAGCAaccgGAGATGACTGTATATCAATTGAAAGTGGAACCCAAAATTTGCAAGTTTCAGATCTAACTTGCGGACCAGGCCATGGtatcagTATCGGAAGCTTAGGGGACACGGGATCCAAAGAATCGGTTTCAGGAATAACAGTGAATGGAGCTAAGCTTTCTGGAACTACAAAGACATGGCAGatgtTATGCATGCAGGGAGGGTCAGGAAGTGCAAGCAATATCAAGTTCCAAAATATTGAAATGGATAATGTGGCTAACCCCATAATAATAGACCAGAACTACTGTGACCAGAAAAATCCATGCAAGCAAAAGgatTCGGGGATTGAGATAAAGAATGTGCTGTACGAGAACATAAAAGGGACAAGTGCTTCAGAAGTAGGCGTGAGCTTGAATTGCAGTGAAAGCGTTCCATGTGAGGGGATAGTGTTGCAGAATGTGAAGCTTCAACGTGAAGGAGATGGAGAAGCTTCCAAAGCTTCCTGTCAAAGTGTTAAGCTATCCTACCAAGGACACGTTTCCCCACGATGcccataa 1344 0.3847 MAFQSHNLLLSFIIISFVACSLQEDPLDDMYVGNSPSNVDDGGTSKSLIIKQRPTNNILRLNRFVMLDATSSSSSATKLNVNDYGAKGDGKTDDTQAFKKAWKEACSSGGAVILAVPQNNYLLKPITFSGPCKSQITMQIGGSIEASEDRSEYSEDTQHWVMFESVEKLTVEGGGTINGNGNTWWKNSCKKNPKLVCIDPNQAVTFYKCKNLIVENLTIKNGQQINVNIEESMDVKVSGVTVKAPGDSPNTDGIHITNTKNIKILKTLIATGDDCISIESGTQNLQVSDLTCGPGHGISIGSLGDTGSKESVSGITVNGAKLSGTTKTWQMLCMQGGSGSASNIKFQNIEMDNVANPIIIDQNYCDQKNPCKQKDSGIEIKNVLYENIKGTSASEVGVSLNCSESVPCEGIVLQNVKLQREGDGEASKASCQSVKLSYQGHVSPRCP 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1302 447 SUPERFAMILY Pectin lyase-like 73 446 IPR011050 -
Sto8g1302 447 ProSitePatterns Polygalacturonase active site. 289 302 IPR000743 GO:0004650|GO:0005975
Sto8g1302 447 Gene3D - 64 444 IPR012334 -
Sto8g1302 447 Pfam Glycosyl hydrolases family 28 106 435 IPR000743 GO:0004650|GO:0005975
Sto8g1302 447 PANTHER ENDO POLYGALACTURONASE 11 446 - -
Sto8g1302 447 PANTHER - 11 446 - -
Sto8g1302 447 SMART pbh1 232 258 IPR006626 -
Sto8g1302 447 SMART pbh1 209 231 IPR006626 -
Sto8g1302 447 SMART pbh1 341 382 IPR006626 -
Sto8g1302 447 SMART pbh1 259 280 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1302 Sto-Chr8 8235083 8237306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1302 37 446 Glycoside Hydrolase AT3G57510 53.846 1.68e-148 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1302 K01184 - gmx:100816917 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2858 13 33889524 33891667 Sto8g1302 8 8235083 8237306 CCT
Sto8g1302 8 8235083 8237306 Sto8g1302 8 8235083 8237306 ECH