Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2858 ATGGCCACCCAAAGGCTAATTCTCCTATCACTAATCTTCATCGTCAATATTTCTAATTTTGTTGCTTGTTATAGCCGTTTGCAAGAGGACCCACTTAGAATGTATgttgataattcacctaattCCATTGACGATGGAGGCACACTATTCAACAAAAACACAGATGTTTTGAGCTTCAAGAGGTCTGATTCTGATCTTAATAACACAGTTTGTGTTAATGATTATGGAGCTAAAGGGGATGGTACTACCGATGACACACAGGCATTCGAGAAGGCTTGGGAAGTTGCATGCTCTTCAGAGGAAGGAGCTACAATTGTGGTGCCTGAGCAGAAGTATCTACTAAAGCCAATAAGATTCTCTGGCCCTTGCAAATCTAACATTACAATGCAGATTTCTGGAGATCTTGAAGCGTCAGATGATCGTTCAGATTACAGCGAAGACTCCACACACTGGCTTATGTTTGACAGAGTTGAGAAGCTATCAGTTAAAGGAGATGGAACCAtcaatggaaatggaaacataTGGTGGCAAAACTCTTGCAAAAGGGACAAAAAACGCCCTTGCAAGAATGCCCCCACGGCTGTGACTTTCTATAAGTGTAAGAATTTGGTGGTTGAGGGGTTGACCATAAAAGATGCCCAACAAATTCATGTTTCTTTCCAGCACTCCAATTACGTTAAAGCTTCGGGTCTTACTGTCACTGCACCACATGACAGTCCTAACACCGACGGAATTCATGTCACAAATACCCAAAACATCCAAATCTCAAGCTCCGTTATTGGAActgGAGATGATTGTATATCAATTGTGAGTGGATCCCAGAATGTAAAAGCCACAGACATAACCTGTGGACCAGGCCATGGTatcagTATTGGAAGCTTGGGGGCCAAAAAAGCCAAGGCATTTGTTTCTGGCATAACCGTGAATAAAGCTAAGCTTTCTGGAACTGCAAACGGAGTTAGAATCAAGACATGGCAGGGTGGATCAGGAAGTGCAAGCAACATCAAGTTCCAGAACATAGAAATGGACAATGTGACTAACCCCATTATAATAGACCAGAACTACTGCGACCAAAAGGGCTCATGCAAACAACAGGACTCAGCAGTTGAGATTAAGAATGTGATGTACCAGAACATAAAAGGTACGAGTGAATCAGAAATGGGAGTGAAATTCGATTGTAGTGACAAGTTTCCATGCGAGGGGATAGTAATGCAGAACATAGACCTACGTCTActtggagaagaaggagaagctgcCAAGGCTTCATGTGACAATGTTCAAGTGTCCTACATTCAAGACGTTTCCCCTCGCTGCCCATAA 1320 0.4053 MATQRLILLSLIFIVNISNFVACYSRLQEDPLRMYVDNSPNSIDDGGTLFNKNTDVLSFKRSDSDLNNTVCVNDYGAKGDGTTDDTQAFEKAWEVACSSEEGATIVVPEQKYLLKPIRFSGPCKSNITMQISGDLEASDDRSDYSEDSTHWLMFDRVEKLSVKGDGTINGNGNIWWQNSCKRDKKRPCKNAPTAVTFYKCKNLVVEGLTIKDAQQIHVSFQHSNYVKASGLTVTAPHDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVSGSQNVKATDITCGPGHGISIGSLGAKKAKAFVSGITVNKAKLSGTANGVRIKTWQGGSGSASNIKFQNIEMDNVTNPIIIDQNYCDQKGSCKQQDSAVEIKNVMYQNIKGTSESEMGVKFDCSDKFPCEGIVMQNIDLRLLGEEGEAAKASCDNVQVSYIQDVSPRCP 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2858 439 PANTHER ENDO POLYGALACTURONASE 13 438 - -
Sto13g2858 439 SUPERFAMILY Pectin lyase-like 67 438 IPR011050 -
Sto13g2858 439 SMART pbh1 332 353 IPR006626 -
Sto13g2858 439 SMART pbh1 303 324 IPR006626 -
Sto13g2858 439 SMART pbh1 200 220 IPR006626 -
Sto13g2858 439 SMART pbh1 250 271 IPR006626 -
Sto13g2858 439 SMART pbh1 223 249 IPR006626 -
Sto13g2858 439 Gene3D - 57 436 IPR012334 -
Sto13g2858 439 PANTHER - 13 438 - -
Sto13g2858 439 ProSitePatterns Polygalacturonase active site. 280 293 IPR000743 GO:0004650|GO:0005975
Sto13g2858 439 Pfam Glycosyl hydrolases family 28 97 428 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2858 Sto-Chr13 33889524 33891667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2858 53 438 Glycoside Hydrolase AT3G57510 57.033 3.63e-152 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2858 K01184 - gmx:100797601 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2858 13 33889524 33891667 Sto8g1302 8 8235083 8237306 CCT
Sto13g2858 13 33889524 33891667 Sto13g2858 13 33889524 33891667 ECH