Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0920 ATGGAAGCCGCAAAAAGTTTGTTTTGCTCACCTCAAACTTTTCCATTAAGAACTAATCACTGGACCGGTgttccttcatcttcttcaacttcttctACTTCAGTTTTGATGTTTCATGAACAAGCCACTCCTGCAGTTACCTCTAGGACTGCTAGTTTTGCAGCCCAGCATTTTCCTACTTCAGTTCTTTTACAAGAGCAGCGTGATGAGTATAGACCTGCACTGCGCCTCTATAAGGAAGATAAAACATCCCAGGCAACATTAAATACAAGGCAGATGAATGTTGCTTCATTTCATGAAGACAATAATAATCTTGGCAATGTTGATCAGTTAGTGCATGACTTTAAGCAGCAATTGCAAAGCTGGCCTCGACTACGGAACTTGTTGACTTCCTTACCAACTGAGGAAATCACAACTTCTTCAATTCTGCAGCCTGTTAAAATTGACTCTAAGAAACCTGCAGAAGGTGAAATATGTGAGGCAGTTGCCCTGGCTAAGCAAGCTTTGTCAGCCTCAAAACAAGCAGCCTCGGTAGCTGAAGACTTGAAATCATTCAAAGCTGAAGATGATGACGATTTACTTGCCCTTGGCCTGCCCTCCACACATTTGGATGACTCTTTGCTCGGAAAAACTAGAACTGTTAAGTCAACACGTCTTCTAGAGAGACGATCAAAGAAGAGGAAAAAGCCAAAGTCAAAAGTTCTAGATGAAGAAAGCTATCTTACTGAAAAGGCAGATGTAAAGGGAAAGTTACTAGTGGAAAAGAAGATAAATGAAGGGTTTGATCAAAATGACCCCCTACGTTTGTTCTTGTGGGGCCCTGAAACAAAGCAACTTTTGACTCTTGAAGAAGAATGTCAATTGATTGCGCAGCTTCAGGATTTATTGAGATTGGAAGGAGCGAAGAGAAGGCTTCAATCTCAGTTTGGGCGGGAACCAACTTTTACTGAATGGGCTGAAGGGGTGGGGATTAGCTGTCGAGACCTGCAGTTACAACTTCATTCTGGTAACAACAGCAGGGATAAGCTGATTTATGCAAATTTACGGATGGTGGTTCACATTGCTAAACATTATCAGGGGCGTGGTCTCAGCTTTCAGGACTTATTGCAGGAGGGAAGTATGGGTCTTATGAAGAGTGTGGAAAAGTTTAAACCCCAAGCTGGTTGCCGTTTTGGTACTTATGCATATTGGTGGATAAGGCAAACAATAAGGAAGGCCATATTTCAACATTCCAGGACAATCCGTCTGCCGGAGAATGTATATACCCTTTTGGGCAAGGTATTGGAGGCAAAGAAATTGTACATTCAAGAGGGAAATCTTCGTCCTACCAAAGAAGAATTAGCAAGAAGGGTAGGAATCACAGTAGACAAGTTAGAAAAGTTGCTATTTGTCGCAAGAATTCCACTTTCCATGCAACAAACTGTGTGGACAGACCAAGATACCACGTTCCAGGAGATTACTGCTGATACTGCAATTGAGATCCCAGATGTGAGTGTTGCAAAACAGCTGATGAGGCGACATGTGCGAAACCTCCTAGGTATTCTCAGCCCAAAAGAAAGGAGGATAATTCGGCTAAGATTCGGTATCGAGGATGGCGAACAGAAATCATTATCAGAAATTGGAAACATCTTTGGTTTGTCTAAGGAAAGAGTTCGACAGTTGGAGAGCCGAGCACTGTACAAGCTCAAGCAGTGCCTTGACAGCCAAGGACTTGATGCATATGCAGACTTGCTTGTATAA 1740 0.4201 MEAAKSLFCSPQTFPLRTNHWTGVPSSSSTSSTSVLMFHEQATPAVTSRTASFAAQHFPTSVLLQEQRDEYRPALRLYKEDKTSQATLNTRQMNVASFHEDNNNLGNVDQLVHDFKQQLQSWPRLRNLLTSLPTEEITTSSILQPVKIDSKKPAEGEICEAVALAKQALSASKQAASVAEDLKSFKAEDDDDLLALGLPSTHLDDSLLGKTRTVKSTRLLERRSKKRKKPKSKVLDEESYLTEKADVKGKLLVEKKINEGFDQNDPLRLFLWGPETKQLLTLEEECQLIAQLQDLLRLEGAKRRLQSQFGREPTFTEWAEGVGISCRDLQLQLHSGNNSRDKLIYANLRMVVHIAKHYQGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENVYTLLGKVLEAKKLYIQEGNLRPTKEELARRVGITVDKLEKLLFVARIPLSMQQTVWTDQDTTFQEITADTAIEIPDVSVAKQLMRRHVRNLLGILSPKERRIIRLRFGIEDGEQKSLSEIGNIFGLSKERVRQLESRALYKLKQCLDSQGLDAYADLLV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0920 579 PRINTS Major sigma-70 factor signature 367 380 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto8g0920 579 PRINTS Major sigma-70 factor signature 391 399 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto8g0920 579 PRINTS Major sigma-70 factor signature 515 527 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto8g0920 579 PRINTS Major sigma-70 factor signature 536 551 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto8g0920 579 PRINTS Major sigma-70 factor signature 551 562 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto8g0920 579 PIRSF Sigma_factor_SigC 1 579 IPR016262 -
Sto8g0920 579 Gene3D - 416 493 IPR036388 -
Sto8g0920 579 Gene3D - 60 412 - -
Sto8g0920 579 Gene3D - 498 578 IPR036388 -
Sto8g0920 579 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 416 489 IPR013324 -
Sto8g0920 579 ProSitePatterns Sigma-70 factors family signature 1. 367 380 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto8g0920 579 CDD Sigma70_r4 505 563 - -
Sto8g0920 579 Pfam Sigma-70 region 3 424 495 IPR007624 GO:0003700|GO:0006352|GO:0006355
Sto8g0920 579 Pfam Sigma-70 region 2 344 412 IPR007627 GO:0003700|GO:0006352|GO:0006355
Sto8g0920 579 ProSitePatterns Sigma-70 factors family signature 2. 536 562 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto8g0920 579 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 263 413 IPR013325 GO:0003700|GO:0006352|GO:0006355
Sto8g0920 579 Pfam Sigma-70, region 4 512 564 IPR007630 GO:0003700|GO:0006352|GO:0006355
Sto8g0920 579 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 5 579 - -
Sto8g0920 579 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 476 574 IPR013324 -
Sto8g0920 579 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 5 579 - -
Sto8g0920 579 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 339 566 IPR014284 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0920 Sto-Chr8 5785701 5789733 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0920 - - aip:107648612 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3197 13 36006029 36018415 Sto8g0920 8 5785701 5789733 CCT
Sto8g0920 8 5785701 5789733 Sto8g0920 8 5785701 5789733 ECH