Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0455 ATGAAGAGGCTAGTAACTGTGTTATTACTCGTGGCATTAAGCTCTTGCCTTGAAAGTAATGGGGATGATAATGGTGAACTGTGTGAACACAAAGCATTGGATGCCAGGCCTCACAGTGTGTCAATCTTGGAGTTTGGGGCTGTTGGAGACGGGAAAACTTTGAATACGGTTGCATTTgaaaatgcaattttttatCTCAAGTCCTTTGCTGACAAAGGTGGTGCTCAGCTCTTTGTTCCATCAGGCAAATGGCTTACTGGAAGTTTCAACCTTACCAGTCACCTAACCCTTTTCTTGGAAAGAGGTGCTACCATTATTGGATCTCAGGATTTGGCAGACTGGGGTGTAGTTGATCCCCTCCCTTCTTATGGTCAAGGGATTGAAGTTCCTGGTGGGAGATATCGCAGCTTGATTTATGGAAATAACGTACATGATGTGGTCATTACAGGTGATAATGGAACTATCGATGGTCAGGGTTCTGTCTGGTGGGATCTGTTCAGCTCTGACGCTTTAAATTATAGCCGGCCTCATCTTGTGGAATTTATTTCTTCTGATTATATCATAATCTCAAATTTGACATTTATAAATTCTCCTGCTTGGGACATCCATCCAGTATATTGCAGCAACGTTCAAATCCAGAACATAACTGCTGAAGCTCCAGCTGAATCCCCTTACACCAGTGGAATAGTGCCAGATTCATCAGAGCTCGTTTGCATTGACAGCAGCAATATTAGCACTGGCCATGATGCAATTGTACTAAAGAGTGGTTGGGATCAATATGGAATCACCTACGGCAAACCAACTTCAAGTGTCCTTATTAGGGATGTGCTCCTACAATCAGCATCTGGTGCTGGCCTGGCATTTGGGAGTGAAATGTCTGGAGGCATATCCAACATAACTGTGAAGCAAATTTATGTACTCAACTCACCTATTGGCATTGAACTTAAGACAACCAGGGGTAGAGGAGGCTATATGAAAGACATTTTCATTTCAGATGCTGTATTGGAAAATCTTTACTTGGGTATTAGCATGACAGGATACTATGGTTCCCATCCAGATGACAAGTATGATCCAAAAGCACTTCCAGATGTTCATGGCATTGCTTTTAAGAATGCCATTGGTTCAAATGTTACTATTGCTGGGAATTTTTCAGGAATAGTTGATTCACCATTCACATCAATATGTCTTTCAAACATGACCTTTTCCTATGGTTCCGAGCTTGCATCTCCTTCGTGGTTCTGTTCTAATATCATGGGTTTCTCCGAGGAGGTGTTTCCTGAGCCATGTCCTGATCTCGAGAGCTCATATTTGAAGTTTTCTTTGTCTTGCTTTTCATCCCCTAGTTATGTATCTAGCTTTTGA 1362 0.417 MKRLVTVLLLVALSSCLESNGDDNGELCEHKALDARPHSVSILEFGAVGDGKTLNTVAFENAIFYLKSFADKGGAQLFVPSGKWLTGSFNLTSHLTLFLERGATIIGSQDLADWGVVDPLPSYGQGIEVPGGRYRSLIYGNNVHDVVITGDNGTIDGQGSVWWDLFSSDALNYSRPHLVEFISSDYIIISNLTFINSPAWDIHPVYCSNVQIQNITAEAPAESPYTSGIVPDSSELVCIDSSNISTGHDAIVLKSGWDQYGITYGKPTSSVLIRDVLLQSASGAGLAFGSEMSGGISNITVKQIYVLNSPIGIELKTTRGRGGYMKDIFISDAVLENLYLGISMTGYYGSHPDDKYDPKALPDVHGIAFKNAIGSNVTIAGNFSGIVDSPFTSICLSNMTFSYGSELASPSWFCSNIMGFSEEVFPEPCPDLESSYLKFSLSCFSSPSYVSSF 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0455 453 PANTHER POLYGALACTURONASE-RELATED 5 448 - -
Sto8g0455 453 PANTHER PECTIN LYASE-RELATED 5 448 - -
Sto8g0455 453 Gene3D - 23 417 IPR012334 -
Sto8g0455 453 SUPERFAMILY Pectin lyase-like 34 431 IPR011050 -
Sto8g0455 453 Pfam Glycosyl hydrolases family 28 135 417 IPR000743 GO:0004650|GO:0005975
Sto8g0455 453 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0455 Sto-Chr8 2812298 2815241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0455 1 445 Glycoside Hydrolase AT3G16850 58.969 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0455 - - gmx:100801823 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0455 8 2812298 2815241 Sto13g3659 13 38756729 38758521 CCT
Sto8g0455 8 2812298 2815241 Sto8g0455 8 2812298 2815241 ECH