Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3659 ATGCACTGGCTTTCAATTGGGATGAAATTAGGTGTGCCTTGTTTACAGGTGGCTGTGCTTTTTCTGGCATTAAGCACTGCAGTAGAAAGCAATGGTGGAACTGGAGTGTGTGAAGACAGAGTATTGAATGCGAGGCCTAGGCCCCACAGTGTGTCAATATTGGAGTTTGGGGCAGTAGGAGATGGGAAAACATTGAACACAGTTGCCTTCCAAAATGCAGTTTTTTATCTTAAGTCATTTGCTGATAAAGGTGGTGCTCAGCTCTATGTTCCATCCGGCACATGGCTCACCGCAAGTTTCAACCTCACCAGCCACCTCACCCTCTTCCTTGCAAGAGGCGCCACCATTCTTGGATCCCAGGATTTTGAGCACTGGAGTCTAGTGGATGCCCTGCCTTCTTATGGCCGAGGAATTGAAGTTCCAGGAGGGAGATATCTCAGCTTAATTTACGGACAGAATTTAAGTGACAATGGAACTATTGATGGCCAGGGTTCTGTTTGGTGGGACATGTTCAGTTCTCATTCCTTGAATTACAGCCGACCACATCTTGTGGAATTCCTAGCTTCTGATGATATCATAATCTCAAATTTAACGTTTATGAATCCTCCTGCTTGGAGCATCCATCCAGTATATTGCAGCAACGTTCAAATTCACAATATTACAGCTCATGCACCAGTTGAATCCCCCTACACCAGTGGCATAGTGCCTGATTCTTCTGAGCATGTTTGCATTGATAACAGCAATATTAGCAGTGGTCATGATGCCATTGTGTTAAAGAGTGGTTGGGATGAGTATGGAGTCTCATATGGCAAAGCAACCTCGAGTGTTCACATTAGGAGTGTTCAGCTACAATCTTCCACAGGTGCTGGTTTAGCATACGGAAGTGAGATGTCTGGAGGCATATCCAACGTAATTGCAGAGAAGCTTCATATATTTAACTCCCATGTTGGCATCCAAGTGAAGACAACCAAGGGTAGAGGTGGCTATGTCAAAGACATATTCATTTCAGAtgtaaaattggaaaatattTATCTGGGTTTCAGCATCACTGGATACTTAGGCTCCCATCCAGATGATGAGTATGATCCAAGTGCTCTTCCAGTTGTTCGTGGCATTACTTTTAACGATGTGATTGGTACAAATGTTACTATTGCTGGCAATTTTTCAGGATTAGTTGATGCACCATTCACATCAATCTGTCTTTCAAATGTGACTTTTTCAATTAGTTCTGAGTCATCTCCTTCATGGTTTTGTTCTGATGTAAAGGGTTTCTCTCAGGAGGTACTTCCTATGCCCTGTCCTGATCTCCAGAGCTCCTCCTTTTCTTGCTTTACTTCCCAATATCCATCAACCTATGTCTCAAGCTTATAA 1371 0.4296 MHWLSIGMKLGVPCLQVAVLFLALSTAVESNGGTGVCEDRVLNARPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYLKSFADKGGAQLYVPSGTWLTASFNLTSHLTLFLARGATILGSQDFEHWSLVDALPSYGRGIEVPGGRYLSLIYGQNLSDNGTIDGQGSVWWDMFSSHSLNYSRPHLVEFLASDDIIISNLTFMNPPAWSIHPVYCSNVQIHNITAHAPVESPYTSGIVPDSSEHVCIDNSNISSGHDAIVLKSGWDEYGVSYGKATSSVHIRSVQLQSSTGAGLAYGSEMSGGISNVIAEKLHIFNSHVGIQVKTTKGRGGYVKDIFISDVKLENIYLGFSITGYLGSHPDDEYDPSALPVVRGITFNDVIGTNVTIAGNFSGLVDAPFTSICLSNVTFSISSESSPSWFCSDVKGFSQEVLPMPCPDLQSSSFSCFTSQYPSTYVSSL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3659 456 Pfam Glycosyl hydrolases family 28 153 422 IPR000743 GO:0004650|GO:0005975
Sto13g3659 456 PANTHER POLYGALACTURONASE-RELATED 17 446 - -
Sto13g3659 456 PANTHER PECTIN LYASE-RELATED 17 446 - -
Sto13g3659 456 SMART pbh1 364 386 IPR006626 -
Sto13g3659 456 SMART pbh1 301 322 IPR006626 -
Sto13g3659 456 SMART pbh1 239 260 IPR006626 -
Sto13g3659 456 SMART pbh1 273 295 IPR006626 -
Sto13g3659 456 SMART pbh1 330 351 IPR006626 -
Sto13g3659 456 SMART pbh1 212 238 IPR006626 -
Sto13g3659 456 SUPERFAMILY Pectin lyase-like 44 436 IPR011050 -
Sto13g3659 456 Gene3D - 35 425 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3659 Sto-Chr13 38756729 38758521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3659 8 444 Glycoside Hydrolase AT3G16850 55.756 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3659 - - gmx:100801823 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0455 8 2812298 2815241 Sto13g3659 13 38756729 38758521 CCT
Sto13g3659 13 38756729 38758521 Sto13g3659 13 38756729 38758521 ECH