Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0270 ATGCCAAGAAGCAGCTTCAACAGTTTGCCACTCAGACAATTGCCACACGGTTTACATCTTCCTTACAATCAGTATTCTTCTGAGTTTCGCATTATGAAACAGTTTTTCGAAGTATTGAGAGACGCGAAGCGCTTCGCTCTCGTCCCTTGGCTCCCCAAATCTGAAATTCTTCGAAAACGCCGTCCACTTCTAGCTGTGGCTGGCTCCTCTTCTGGTTCACTGACGAGGGTGACACTCACAGCAGATATGTTACAGtgcatttttcttctttccgaTTCCGGAGAGGTAATGCTAGAGAAGCAGCTAACTGGGCACCGCGTAGATCGATCCATATGTGCCTGGTTCTGGGAGCAGGCCGTTTCTCAAGGTGATTCCTTCAAGCAACAACCAGTAATTGCATCCCCAACACActatcttttccaagtttttcgTGAGGGAATTACTTTTTTGGCATGCACTCAAGTCGAAATGCCACCATTAATGGGAATTGAGTTCCTCTGTAGGGTAGCTGATGTCCTTAATGACTATCTTGGAGGGTTGAATGAAGACTTGATAAAAGACAATTTTGTCATTGTATATGAGCTACTGGATGAGATGATAGACAATGGATTCCCCCTAACTACAGAACCTAATATCTTGCGAGAGATGATAGCTCCACCAAATATAGTGAGCAAGATGTTGAGTGTCGTGACTGGCAGCAGTTCCAATGTGAGTGACACACTTCCAGGTGCAACAGCATCTATTGTTCCCTGGAGAACAGCAGACGCAAAATATGCCAACAATGAAGTTTATGTAGATCTTGTTGAAGAAATGGATGCAGTAATAAACAGGGATGGAGTTCTAGTGAAATGTGAGATCTACGGTGAAGTGCAAGTGAATTCTCATATCACCGGTGTTCCTGATTTGACTCTTTCATTTGCAAATCCTTCAATTCTAGATGATGTGAGGTTCCATCCATGTGTTCGATTTCGGCCTTGGGAATCTCAACAAATTCTTTCATTTGTTCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGGGTTAGAAAGTTGAAGAACACCCCAATATATGTGAAGCCCCAGTTAACTTCAGATGGTGGGACATGCCGTGTTAATATAATGGTGGGAATTCGAAATGATCCTGGAAAGACAATTGACTCAGTTAGTGTAGAATTTCAGCTTCCTCCGTGCATCTTATCAGCTGATCTGACCTCGAATCATGGAACCGTAAACATCCTTGCCAACAAGACATGCTCATGGTCCATTGGTCGGATCCCAAAAGACAAAGCCCCTTCCATGTCTGGAACATTTGTGCTTGAGACCGGCTTGGAGCGCCTTCATGTCTTCCCCACACTCAAAGTGGGTTTTAAGATAATGGGCGTCGCCCTTTCTGGTCTTCAAATAGAAAAACTTGATCTGAAGAGCGTACCCTACCGTTTTTACAAAGGTTTTCGAGCTCTTACTCGGGGAGGTGAATTTGAGGTCAGGTCTTGA 1494 0.4297 MPRSSFNSLPLRQLPHGLHLPYNQYSSEFRIMKQFFEVLRDAKRFALVPWLPKSEILRKRRPLLAVAGSSSGSLTRVTLTADMLQCIFLLSDSGEVMLEKQLTGHRVDRSICAWFWEQAVSQGDSFKQQPVIASPTHYLFQVFREGITFLACTQVEMPPLMGIEFLCRVADVLNDYLGGLNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGSSSNVSDTLPGATASIVPWRTADAKYANNEVYVDLVEEMDAVINRDGVLVKCEIYGEVQVNSHITGVPDLTLSFANPSILDDVRFHPCVRFRPWESQQILSFVPPDGQFKLMSYRVRKLKNTPIYVKPQLTSDGGTCRVNIMVGIRNDPGKTIDSVSVEFQLPPCILSADLTSNHGTVNILANKTCSWSIGRIPKDKAPSMSGTFVLETGLERLHVFPTLKVGFKIMGVALSGLQIEKLDLKSVPYRFYKGFRALTRGGEFEVRS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0270 497 CDD AP3_Mu_N 85 224 - -
Sto8g0270 497 PANTHER AP COMPLEX SUBUNIT MU 89 496 - -
Sto8g0270 497 Gene3D Mu homology domain, subdomain B 354 495 - -
Sto8g0270 497 PIRSF AP_complex_mu 83 497 IPR001392 GO:0006886|GO:0016192|GO:0030131
Sto8g0270 497 Pfam Adaptor complexes medium subunit family 249 496 IPR028565 -
Sto8g0270 497 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 249 496 IPR036168 -
Sto8g0270 497 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 249 269 IPR018240 GO:0006886|GO:0016192|GO:0030131
Sto8g0270 497 PRINTS Clathrin coat assembly protein signature 182 209 IPR001392 GO:0006886|GO:0016192|GO:0030131
Sto8g0270 497 PRINTS Clathrin coat assembly protein signature 312 339 IPR001392 GO:0006886|GO:0016192|GO:0030131
Sto8g0270 497 CDD AP-3_Mu3_Cterm 249 496 - -
Sto8g0270 497 Gene3D - 83 224 - -
Sto8g0270 497 ProSiteProfiles Mu homology domain (MHD) profile. 260 496 IPR028565 -
Sto8g0270 497 PANTHER CARMINE, ISOFORM A 89 496 - -
Sto8g0270 497 SUPERFAMILY SNARE-like 83 224 IPR011012 -
Sto8g0270 497 Gene3D Mu homology domain, subdomain B 249 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0270 Sto-Chr8 1780195 1784972 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0270 K12398 - gmx:100799191 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0270 8 1780195 1784972 Sto13g3811 13 39622747 39625605 CCT
Sto8g0270 8 1780195 1784972 Sto8g0270 8 1780195 1784972 ECH