Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3811 ATGCTAGAGAAACAGCTAATTGGGCACCGCGTAGATCGATCCATATGTTCCTGGTTCTGGGAACAGGCTGTTTCACAAGGTGATTCCTTCAAGCAACAACCTGTAATTGCATCTCCGACACAttatcttttccaagtttttcgTGAGGGGATCACTTTTTTGGCGTGCACCCAAGTTGAAATGTCACCATTGATGGGCATTGAGTTCCTTTGTAGGGTAGCTGATGTCATCAATGATTATCTTGGAGGGATGAATGAAGACTTGATAAAAGACAACTTTGTCATTGTATATGAGCTGCTGGATGAGATGATAGACAATGGTTTCCCGCTAACTACAGAACCTAATATCCTACAAGAAATGATAGCTCAACCTAATATTGTTAGCAAAATGTTGAGCGTTGTAACTGGCAACAGTTCAAATTTGAGTGACACCCTTCGAGGTACAACATCTTGTgttccctggagatcagcagaCCCAAAGTATGCAAACAATGAAGTTTACGTAGATCTTTTGTTGGAACAACGaaatttcctttctttcagGGATGGAGTTCTGGTAAAATGTGAGATCTATGGTGAAGTTCAAGTAAATTCCCATATCTCCGGTCTTCCTGATTTGACTCTTTCGTTTGCAAATCCTTCAATTCTAGATGATGTGAGGTTCCATCGCTGTGTTTGTCATCAGACTTGGGAATCTCATCAAACTCTTTCCTTTGTGCCTCCTGATGGACAATTTAAGCTCATGAGTTACAGGGTTAGAAAATTGAAGAGCACCCCAATATATGTAAAGCCACAGTTAACTTCAGATGGTGGGACATGCCGGGTTAATGTATTGGTTGGAACACGGAATGATCCTGGAAAGACAATTGACTCAGTTACTGTTCAATTTATGCTTCCTCCTTGCATCTTATCAGCTGATCTCACTTCAAATCATGGAACAGTGAACATCCTTTCTAACAAGACATGCACTTGGTCCATTGGAAGGATCCCAAAAGATAAAGCTCCTTCAATGTCTGGAACATTTGTGCTTGAGAATGGATTGAAGCGCCTTAATGTCTTCCCAACATTTCAAGTGGGTTTTAGGATTATGGGTGTTGCTCTCTCTGGTTTGCAAATAGATAAACTGGATCTCAAGAGTGTACCCTACCGTTTTTATAAAGGATTTCGGGCTCTTAGTCGAGCAGGTGAATTTGAGATCAGGtcataa 1206 0.3905 MLEKQLIGHRVDRSICSWFWEQAVSQGDSFKQQPVIASPTHYLFQVFREGITFLACTQVEMSPLMGIEFLCRVADVINDYLGGMNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILQEMIAQPNIVSKMLSVVTGNSSNLSDTLRGTTSCVPWRSADPKYANNEVYVDLLLEQRNFLSFRDGVLVKCEIYGEVQVNSHISGLPDLTLSFANPSILDDVRFHRCVCHQTWESHQTLSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLTSDGGTCRVNVLVGTRNDPGKTIDSVTVQFMLPPCILSADLTSNHGTVNILSNKTCTWSIGRIPKDKAPSMSGTFVLENGLKRLNVFPTFQVGFRIMGVALSGLQIDKLDLKSVPYRFYKGFRALSRAGEFEIRS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3811 401 CDD AP3_Mu_N 1 128 - -
Sto13g3811 401 PANTHER AP COMPLEX SUBUNIT MU 15 400 - -
Sto13g3811 401 SUPERFAMILY SNARE-like 9 128 IPR011012 -
Sto13g3811 401 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 152 400 IPR036168 -
Sto13g3811 401 Gene3D Mu homology domain, subdomain B 258 399 - -
Sto13g3811 401 ProSiteProfiles Mu homology domain (MHD) profile. 163 400 IPR028565 -
Sto13g3811 401 CDD AP-3_Mu3_Cterm 152 400 - -
Sto13g3811 401 Gene3D Mu homology domain, subdomain B 152 396 - -
Sto13g3811 401 Pfam Adaptor complexes medium subunit family 152 400 IPR028565 -
Sto13g3811 401 PIRSF AP_complex_mu 1 401 IPR001392 GO:0006886|GO:0016192|GO:0030131
Sto13g3811 401 Gene3D - 1 129 - -
Sto13g3811 401 PANTHER CARMINE, ISOFORM A 15 400 - -
Sto13g3811 401 PRINTS Clathrin coat assembly protein signature 86 113 IPR001392 GO:0006886|GO:0016192|GO:0030131
Sto13g3811 401 PRINTS Clathrin coat assembly protein signature 216 243 IPR001392 GO:0006886|GO:0016192|GO:0030131
Sto13g3811 401 PRINTS Clathrin coat assembly protein signature 323 334 IPR001392 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3811 Sto-Chr13 39622747 39625605 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3811 K12398 - qsu:112034039 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0270 8 1780195 1784972 Sto13g3811 13 39622747 39625605 CCT
Sto13g3811 13 39622747 39625605 Sto13g3811 13 39622747 39625605 ECH