Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0233 ATGTCTTCTTTGAGCAGAGAATTGGTGTTTCTCATTCTCCAATTTCTGGAGGAGGAGAAATTTAAAGAGTCTGTGCACAAGCTTGAGAAAGAGTCCGCGTTTTTCTTCAACATGAAGTTCTTTGAGGAAAAAGTTCAGGCAGGAGAATGGGAAGAAGTTGAGAAGTACTTATCAGGGTTTACTAAAGTTGATGATAATAGATACTCCATGAAGATATTCTTTGAAATCAGGAAACAAAAGTATCTGGAAGCACTTGATCGGCAAGACAAGGCAAAGGGTGTTGAGATATTAGTTAATGACTTAAAAGTGTTCTCAACTTTCAATGAGGATCTATACAAAGAAATCACCCAGCTGTTAACGCTTAATAATTTCAGGGAGAATGAGCAGCTGTCTAAGTATGGTGACACCAAAACTGCTCGGAGCATCATGTTGATAGAGCtgaaaaaattgatagaagCAAATCCTCTTTTTCGCGACAAGCTTCTCTTCCCTAGTCTTAAATCATCGAGATTAAGGACATTAATCAATCAAAGTTTGAATTGGCAGCACCAGCTTTGCAAAAATCCAAGGCCAAACCCAGATATTAAGACTTTATTTACAGATCATACATGTTCACCTCCTAGTGGTCCTCTAACACCCACACCTGTCAACCTTCCAGTTGCTGCAGTTGCGAAACCTGCTGCTTATACTTCACTTGGAGCTCATGGTCCTTTCCCCCCTACTGCTGCTGCTACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCTTCTGCTTCATCATCTGTCCAAGCAGCAGTTGTCACGGCATCATCCATACCAGTTGCACAGAATCAAGTGTCTATCTTGAAACGTCCAAGAACACCTCCTGCAACTCCTGCCCTGGTTGATTATCAGAATCCTGATCATGAACAGTTAATGAAAAGGCTTCGACCTGCCCATTCTGTAGATGAGGTTTCCTATCCCACAGCTAGACATGATTCTTATTCTTTGTCAATGGATGATATTCCAAGAATGGTGGCTATGACTTTGCATCAAGGATCTTCTGTTACAAGCATGGATTTTCATCCTTCACACCACATGTTGCTTCTTGTTGGTTCTAATAATGGTGAAATTACCCTCTGGGAAATTGGGTTACGGGAGAGGCTGGTTTCAAAACCATTCAAGATATGGGATATGTCAGCATGCTCATTGGCGTGTCagGCAGCTGTTGTCAAAGATACACCAATTTCTGTCAGCCGTGTTATGTGGAGCCCAGATGGAAATTTCGTAGGTGTTGCATTTACCAAACACTTGGTTCACCTGTATGCGTACACTGGGTCAAATGAGCTGAGCCAGCGTTTGGAGATTGATGCCCATACTGGTGGTGTAAATGACTTGGCATTTGCTCATCCAAATAAACAGCTATGTATCGTGACATGTGGAGATGATAAGATAATAAAGGTGTGGGAGTTAAAtggacgaaaactatttaacttTGAGGGGCACGAAGCACCTGTGTATTCTATTTGTCCCCATCACAAAGAGAACATTCAGTTTATATTTTCAACTGCCATTGATGGAAAAATAAAGGCCTGGCTGTATGATAACATGGGTTCTAGAGTTGACTATGATGCCCCAGGTCAATGGTGTACCACAATGCTTTACAGTGCTGATGGAAGCAGATTATTTTCTTGTGGAACAAGTAAAGATGGAGAATCTTTCCTAGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGGACATATGATGGTCTCAGAAGGAAATCTGCTGGAGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCAGGTGAAGGTGGTCAAATAAAGTTTTGGACAATGGACAGTATTGCTTGTCTAGCAATCATTGATGCAGGGGGTGGACTGCAGACCCTTCCGCGCTTGAGATTTAATAAGGAAGGAAATCTTCTTGCTGTCACTACTGCGGACAATGGATTCAAGATACTTGCTAATGCTGTTGGCCTTAGATCCTTAAGAGCAATGGAAACCCCAGCATTTGAAGCGTTGAGGTCACCCATAGAATCTGCTTCAATTAAGGACGTATCTGGCTCCTCTGCTGTAAATGCCAGTCCTGTCAACTGTAAAGTGGAAAGGAGCTCCCCTGTCAGGCCTTCTCCGATCCTTAATGGAGTTGACCCTATCGGACGAAGTGTGGAGAAACCAAGAACCATAGAAGATGTAATGGATAGAACTAAATCGTGGCAGCTGTCTGAAATTGTGGATTCTGTTCAATGTCGGTTAGTTACCATGCCTGAGAGCGCAGATGCTTCCAGCAAGGTTGTTCGACTTTTATATACAAATTCTGGTGTTGGTGTTTTGGCACTTGGGTCAAATGGTATTCAAAAGCTGTGGAAGTGGACTCGCAATGAACAAAATCCCACTGGGAAGGCCACTGCCAGTGTTGTACCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATACTTCAGGTGTCAACCTTGAAGAAGCAGTTCCCTGCATTGCCCTCTCAAAGAATGACTCATATGTTATGTCTGCCTGTGGTGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCAGCATCTACTTTCCTTGCTTTCCATCCTCAGGATAACAACATCATAGCCATTGGGATGGAGGATTCAACCATTCATATTTATAATGTTAGAGTGGATGAGGTCAAATCAAAATTGAGGGGTCACCAGAAGCGTATAACTGGTTTAGCCTTTTCAACCAATCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTGTGGAGCATTGATTCATGGGAGAAAAGAAAATCAATGACATTACAATTACCTGTGGGAAAGGCTCCTGTTGGTGATACCAGAGTGCAGTTCCATTCTGATCAAGTCCGCTTATTGGTAGTTCATGAAACTCAGTTGGCAATATATGATGCTTCCAAAATGGATCGCATTCGGCAGTGGGTTCCACAAGAGGTTCTGTCTGCTCCCATTTCAAATGCAGCTTATTCCTGCAACAGCCAGTTGATATATGCTACCTTCTGTGATGGCAACATTGGGGTTTTTGATGCTGATAGCTTGAGATTAAGATGTCGTATTGCTCCATCAGCATACTTCTCACAGGCAACTCTAAGTGGAAGCCAAGCTGTGTACCCTCTCGTTATTGCAGCTCATCCACTAGAGCCCAACCAATTTGCCGTGGGATTGACTGATGGATCCGTCAAAGTGATGGAACCCACTGAATCAGAGGGTAAATGGGGATCTACTCCACCTATGGATAATGGAATGTTAAACAGTAATAGGCCGGCGTCATCATCTACTACAAGCAACCACACGCCTGACCAGGCGCAAAGATGA 3405 0.4258 MSSLSRELVFLILQFLEEEKFKESVHKLEKESAFFFNMKFFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKGVEILVNDLKVFSTFNEDLYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLLFPSLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCSPPSGPLTPTPVNLPVAAVAKPAAYTSLGAHGPFPPTAAATANANALAGWMANASASSSVQAAVVTASSIPVAQNQVSILKRPRTPPATPALVDYQNPDHEQLMKRLRPAHSVDEVSYPTARHDSYSLSMDDIPRMVAMTLHQGSSVTSMDFHPSHHMLLLVGSNNGEITLWEIGLRERLVSKPFKIWDMSACSLACQAAVVKDTPISVSRVMWSPDGNFVGVAFTKHLVHLYAYTGSNELSQRLEIDAHTGGVNDLAFAHPNKQLCIVTCGDDKIIKVWELNGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYDGLRRKSAGVVQFDTTQNRFLAAGEGGQIKFWTMDSIACLAIIDAGGGLQTLPRLRFNKEGNLLAVTTADNGFKILANAVGLRSLRAMETPAFEALRSPIESASIKDVSGSSAVNASPVNCKVERSSPVRPSPILNGVDPIGRSVEKPRTIEDVMDRTKSWQLSEIVDSVQCRLVTMPESADASSKVVRLLYTNSGVGVLALGSNGIQKLWKWTRNEQNPTGKATASVVPQHWQPNSGLLMTNDTSGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLRGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDSWEKRKSMTLQLPVGKAPVGDTRVQFHSDQVRLLVVHETQLAIYDASKMDRIRQWVPQEVLSAPISNAAYSCNSQLIYATFCDGNIGVFDADSLRLRCRIAPSAYFSQATLSGSQAVYPLVIAAHPLEPNQFAVGLTDGSVKVMEPTESEGKWGSTPPMDNGMLNSNRPASSSTTSNHTPDQAQR 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0233 1134 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Sto8g0233 1134 PANTHER PROTEIN, PUTATIVE-RELATED 1 1134 - -
Sto8g0233 1134 Gene3D - 741 966 IPR015943 GO:0005515
Sto8g0233 1134 Pfam WD domain, G-beta repeat 914 947 IPR001680 GO:0005515
Sto8g0233 1134 Pfam WD domain, G-beta repeat 451 484 IPR001680 GO:0005515
Sto8g0233 1134 Gene3D - 967 1107 IPR015943 GO:0005515
Sto8g0233 1134 Gene3D - 298 537 IPR015943 GO:0005515
Sto8g0233 1134 Gene3D - 538 667 IPR015943 GO:0005515
Sto8g0233 1134 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 915 950 - -
Sto8g0233 1134 SMART ctlh 34 92 IPR006595 -
Sto8g0233 1134 ProSitePatterns Trp-Asp (WD) repeats signature. 472 486 IPR019775 -
Sto8g0233 1134 MobiDBLite consensus disorder prediction 1108 1134 - -
Sto8g0233 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 386 IPR001680 GO:0005515
Sto8g0233 1134 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1134 IPR027728 GO:0006355
Sto8g0233 1134 SUPERFAMILY WD40 repeat-like 346 659 IPR036322 GO:0005515
Sto8g0233 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 451 494 IPR001680 GO:0005515
Sto8g0233 1134 SMART WD40_4 442 485 IPR001680 GO:0005515
Sto8g0233 1134 SMART WD40_4 399 438 IPR001680 GO:0005515
Sto8g0233 1134 SMART WD40_4 531 574 IPR001680 GO:0005515
Sto8g0233 1134 SMART WD40_4 1053 1094 IPR001680 GO:0005515
Sto8g0233 1134 SMART WD40_4 577 617 IPR001680 GO:0005515
Sto8g0233 1134 SMART WD40_4 908 947 IPR001680 GO:0005515
Sto8g0233 1134 SMART WD40_4 865 905 IPR001680 GO:0005515
Sto8g0233 1134 SMART WD40_4 338 377 IPR001680 GO:0005515
Sto8g0233 1134 SMART WD40_4 820 862 IPR001680 GO:0005515
Sto8g0233 1134 SMART WD40_4 487 528 IPR001680 GO:0005515
Sto8g0233 1134 SMART WD40_4 1003 1039 IPR001680 GO:0005515
Sto8g0233 1134 MobiDBLite consensus disorder prediction 1093 1134 - -
Sto8g0233 1134 SMART Lish 4 36 IPR006594 GO:0005515
Sto8g0233 1134 SUPERFAMILY WD40 repeat-like 835 1095 IPR036322 GO:0005515
Sto8g0233 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 915 956 IPR001680 GO:0005515
Sto8g0233 1134 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0233 Sto-Chr8 1547021 1557211 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0233 - - gmx:100793575 1994.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0233 8 1547021 1557211 Sto13g3850 13 39862396 39871159 CCT
Sto8g0233 8 1547021 1557211 Sto8g0233 8 1547021 1557211 ECH