Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3850 ATGTCTTCTTTGAGCAGAGAATTGGTGTTTCTCATACTCCAATTTCTGGAGGAGGAGAAGTTTAAAGAGTCGGTGCACAAGTTGGAGAAAGAATCTGGGTTTTTCTTCAATATGAagtattttgaagaaaaagttCAGGCTGGAGAATGGGAAGAAGTTGAGAAGTACTTGACAGGATTTACTAAAGTTGATGATAATAGATACTCGATGAAAATATTCTTTGAAATCAGGAAGCAAAAATATCTGGAAGCTCTTGATCGacAGGACAGGTCAAAGGCCGTTGAGCTATTAGTTACTGATTTAAAAGTGTTCTCCACTTTCAATGAGGATCTATACAAAGAAATTACCCAGTTGTTAACCCTTAATAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGATACCAAAACTGCTCGAAGCATTATGTTGATAGAGCTTAAAAAACTCATAGAAGCAAATCCTCTTTTCCGCGATAAGCTTATCTTCCCCACTCTTAAGTCATCAAGATTGCGGACCTTAATCAATCAGAGTTTGAACTGGCAGCACCAACTTTGCAAAAACCCTCGGCCAAACCCAGATATCAAGACTTTATTTACTGATCACTCATGTACACCATCTAATGGTCCTCTGGCACCCACACCTGTCAATCTTCCAGTTGCTGCAGTTGCAAAGCCTGCTACTTATACATCTCTTGGAGCTCATGGTCCCTTTCCTCCAGCTGCTGCAGCAACTGCTAATCCCAATGCTTTAGCTGGTTGGATGGCCAACGCCTCTGCTCCATCATCTGTCCAAGCTGCTGTTGTCACTGCATCATCTATACCAGTTCCACAGAATCAAGtttctaTCTTGAAACGTCCAAGAACACCTCCAACAGCGCCTGGCATGGTTGATTATCAGAATTCTGATCATGAACAGCTAATGAAAAGGCTTCGGCCTGCTCATCCTGTAGAAGAGGTTTCCTATCCTATAACTCAACAATCTTCTTGGTCACTGGATGATTTACCCAGAACAGTGGCTATGACTTTGCATCAAGGATCCTCAGTGTCAAGCATGGATTTTCATCCTTTGAGTCACCGGTTGCTTCTTGTTGGTTCTACTAATGGTGAAATTACAATATGGGACCTTGGGTTGCGTGAGAGGTTGGTTTCAAAGCCATTCAAGATATGGGAAATGTCGACATGCTCATTGGCATTTCAgGCGGCTGTTGTCAAAGATGCACCTATTTCTGTTAGCCGTGTTACTTGGAGCCCAGAGGCAAATTTTGTGGGTGTTGCATTTACCAAGCATCTGATTCACTTGTATTCCTATACAAGTCCAAATGAACTAACCCAGCGTTTAGAGATTGATGCCCATACTGGTGGTGTGAATGACTTGGCATTTGCTCATCCAAATAAACATTTATGTATGGTGACTTGTGGTGATGACAAGTTGATAAAGGTGTGGGACATGAATGGGCGAAGGCTGTTTGTCTTTGAGGGGCACGAGGCACCTGTATATTCTATTTGTCCTCATCATAAAGAGAACATTCAGTTCATATTCTCAACTGCCATCGATGGGAAAATAAAGGCTTGGTTGTATGATAACATGGGTTCTAGAGTTGACTATGATGCCCCTGGTCACTGGTGTACCACAATGCTTTACAGTGCTGATGGAAGTAGATTGTTTTCTTGTGGGACTAGTAAAGATGGAGAGTCTTTCTTAGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGGACATACAATGGGTTCAGGAAGAAATCTGCTGGTGTTGTGCAGTTTGATACAACCCAAAATCGCTTCTTGGCGGCAGGTGAAGATGGCCAAATAAAGTTTTGGGATATGGACAATGTTAATCTTCTAACAAGCACTGATGCTGAGGGTGGACTACAGAACCTTCCACGCTTGAGATTTAATAAAGAAGGAAATCTTCTTGCCATTACTACTATGGACAATGGAATCAAGATTCTTGCTAATGCTGTTGGTCTTAGATCCTTGAGACCCAAAGAAGCTGCAGTATTTGAAGCATTGAGGTCGCCCATTGAACCTGCGGCAATCAAGGTATCTGGCTCCTCTGGTGTTAATGTTAGTCCTGTCAACTTGAAAGTGGAAAGAAGCTCCCCTGTCAGGCCTTCTCCGATTCTTAATGGAGTTGATACTACGGGTCGAAGTTTGGAGAAGCCAAAAAATGTTGAAGATGTAATAGAGAGGGCTAAGCCATGGCAACTGTCTGAAATTGTGGATCCTGTCCAATGTCGGTTAGTTAACATGCCTGACAGCACAGATTCTTACAGCAAGgttGTCCGACTACTATACACAAATTCTGGCGTTGGTGTTTTAGCTCTTGGATCAAATGGTACGCAGAAGCTGTGGAAGTGGGCTCGCAATGAACAGAATCCCACTGGGAAGGCAACTGCCAATGTTGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATATCTCAGGAGTTAACCTTGAAGAAGCAGTTCCTTGCATTGCACTCTCAAAGAATGACTCATATGTGATGTCTGCATGTGGTGGAAAGGTTTCCCTATTTAACATGATGACTTTCAAGGTCATGACAACATTCATGCCACCTCCTCCTGCCTCTACCTTCTTAGCTTTCCATCCCCAAGATAACAATATCATAGCCATTGGGATGGAGGATTCAACCATTCACATTTACAATGTTAGAGTGGATGAGGTGAAATCAAAACTGAGGGGTCACCAGAAGCGTATCACTGGTTTAGCCTTTTCAACCAATCTCAACATACTGATTTCATCGGGTGCTGATGCTCAACTTTGTGTATGGAGCATTGATACATGGGAGAAAAGGAAATCGTTGACAATACAATTACCTGCGGGAAAGGCAGCTGTTGGTGATACACGAGTGCAATTCCATTCTGACCAACTTCGTTTATTGGTGGTCCATGAGACTCAGCTGGCTATCTATGATGGCAACAAGATGGATCGCGTTCGTCAGTGGGTTCCACAAGATGTTCTGTCTGCTCCCATATCATATGCGTCTTATTCATGCAACAGTCAGTTAATATATGCAACTTTTTCCGATGGTAACATTGGGATCTTCGATGCTGACAACTTGCGACTACGATGTCGTATTGCTCCATCAGCATACTTGTCCCAGGCAGCCTTAAATGGAAGCCAAGCAGTGTGCCCTCTGGTTGTTGCGGCCCATCCACAAGAGCCGAACCAGTTTGCTATTGGGTTTAGTGATGGGTCGGTGAAGGTGATGGAGCCCACAGAATCAGAGGGAAAGTGGGGATCTAGTCCACCAATTGATAATGGAATGTTGAACGGAAGGACAGCCTCATCTTCTACGACAAGCAACCACACCCCTGATCAGCAACAACAACGATAG 3396 0.4311 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDRSKAVELLVTDLKVFSTFNEDLYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCTPSNGPLAPTPVNLPVAAVAKPATYTSLGAHGPFPPAAAATANPNALAGWMANASAPSSVQAAVVTASSIPVPQNQVSILKRPRTPPTAPGMVDYQNSDHEQLMKRLRPAHPVEEVSYPITQQSSWSLDDLPRTVAMTLHQGSSVSSMDFHPLSHRLLLVGSTNGEITIWDLGLRERLVSKPFKIWEMSTCSLAFQAAVVKDAPISVSRVTWSPEANFVGVAFTKHLIHLYSYTSPNELTQRLEIDAHTGGVNDLAFAHPNKHLCMVTCGDDKLIKVWDMNGRRLFVFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDNVNLLTSTDAEGGLQNLPRLRFNKEGNLLAITTMDNGIKILANAVGLRSLRPKEAAVFEALRSPIEPAAIKVSGSSGVNVSPVNLKVERSSPVRPSPILNGVDTTGRSLEKPKNVEDVIERAKPWQLSEIVDPVQCRLVNMPDSTDSYSKVVRLLYTNSGVGVLALGSNGTQKLWKWARNEQNPTGKATANVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLRGHQKRITGLAFSTNLNILISSGADAQLCVWSIDTWEKRKSLTIQLPAGKAAVGDTRVQFHSDQLRLLVVHETQLAIYDGNKMDRVRQWVPQDVLSAPISYASYSCNSQLIYATFSDGNIGIFDADNLRLRCRIAPSAYLSQAALNGSQAVCPLVVAAHPQEPNQFAIGFSDGSVKVMEPTESEGKWGSSPPIDNGMLNGRTASSSTTSNHTPDQQQQR 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3850 1131 SMART ctlh 34 92 IPR006595 -
Sto13g3850 1131 MobiDBLite consensus disorder prediction 1107 1131 - -
Sto13g3850 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 485 IPR001680 GO:0005515
Sto13g3850 1131 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Sto13g3850 1131 Gene3D - 564 669 IPR015943 GO:0005515
Sto13g3850 1131 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Sto13g3850 1131 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1129 IPR027728 GO:0006355
Sto13g3850 1131 SUPERFAMILY WD40 repeat-like 830 1092 IPR036322 GO:0005515
Sto13g3850 1131 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Sto13g3850 1131 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Sto13g3850 1131 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Sto13g3850 1131 SMART WD40_4 485 526 IPR001680 GO:0005515
Sto13g3850 1131 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Sto13g3850 1131 SMART WD40_4 336 375 IPR001680 GO:0005515
Sto13g3850 1131 SMART WD40_4 392 436 IPR001680 GO:0005515
Sto13g3850 1131 SMART WD40_4 905 944 IPR001680 GO:0005515
Sto13g3850 1131 SMART WD40_4 1050 1091 IPR001680 GO:0005515
Sto13g3850 1131 SMART WD40_4 575 615 IPR001680 GO:0005515
Sto13g3850 1131 SMART WD40_4 862 902 IPR001680 GO:0005515
Sto13g3850 1131 SMART WD40_4 440 483 IPR001680 GO:0005515
Sto13g3850 1131 SMART WD40_4 823 859 IPR001680 GO:0005515
Sto13g3850 1131 SMART WD40_4 529 572 IPR001680 GO:0005515
Sto13g3850 1131 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Sto13g3850 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Sto13g3850 1131 SUPERFAMILY WD40 repeat-like 327 657 IPR036322 GO:0005515
Sto13g3850 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Sto13g3850 1131 Gene3D - 766 1098 IPR015943 GO:0005515
Sto13g3850 1131 SMART Lish 4 36 IPR006594 GO:0005515
Sto13g3850 1131 MobiDBLite consensus disorder prediction 1091 1131 - -
Sto13g3850 1131 PANTHER PROTEIN, PUTATIVE-RELATED 1 1129 - -
Sto13g3850 1131 Gene3D - 316 563 IPR015943 GO:0005515
Sto13g3850 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 384 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3850 Sto-Chr13 39862396 39871159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3850 430 659 Miscellaneous Gene Families AT5G08390 21.368 2.65e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3850 - - gmx:100793575 2002.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0233 8 1547021 1557211 Sto13g3850 13 39862396 39871159 CCT
Sto13g3850 13 39862396 39871159 Sto13g3850 13 39862396 39871159 ECH