Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g1018 ATGAGCGACGAAGGAGAAAGGACTTGTCCTCTGTGTGCAGAAGAGATGGATTTGACAGATCAACAGTTGAAGCCATGCAAATGTGGTTATGAGATTTGCGTCTGGTGTTGGCATCATATATTGGAGATGGCTGAGAAGGATGACACAGAAGGGCGATGCCCTGCATGTCGTTCTCCTTATGACAAGGAAAAGATTGTGGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAACTAATATGGAGAGAAAGATGAAGAACCAGAAAGCAAAGTCTAAATTATCTGAAGGACGGAAGCAGCTCAGCAGTGTGCGAGTGATTCAGCGAAACCTTGTATACATAGTTGGGTTGCCTCTTAATTTGGCGGATGAAGATCTTCTCCATCGGCGAGAGTATTTTGGCCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTCGAACGGCTGCTGGTGTTATTCAACAGTTTCCGAACAGTACATGTAGTGTATATATAACTTAttcaaaggaagaagaagcaatTCGTTGTATTCAAAGTGTACATGGATTTGTCTTGGAGGGTAAACCTTTAAGGGCATGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATGTGCCTTGCAGCAATCCCGATTGTCTATATCTGCATGAGATTGGTTCTCAAGAAGACAGTTTTACTAAAGATGAAATCATTTCAGCATACACTAGTCGAGTCCAACAAATTACTGGTGCTGCAAACAATATGCAAGAGCATTCGGGGAGTGTATTGCCTCCTCCATTGGACGATTACATCAATAGTTCTTCAGGAAAGCCCATTGCGAAAAATGTTTCAAatAATCCTTCGAGCACTTTAAGAGGTTCACCTCCTAATGGAAGTTCAGGAAGATCTATAACTCTTCCTGCTGCTGCCGCATGGATGAAATTGTGTAATTTCTcccataaattatttttgtttgacTTGCCTAGGGGTACGCGGACCACAAGTTGTCAGCCCCCTTCTGGAGGTCTGTTGTGTCCAAATGGACCATCCAAGCCAAAGCCTGATACAGCTAGTAGTACTCTAGCCTTTTCTTCAGCTGTTGCAGGCACAATTCAGCCTTCTGCATTGCATGGTAATGAGACAAAGAGGCCAACTTCAAGTGATGGGAGTCATATTATGCTGCCTAGCCCTAGAGTAAAAAATGAATTGTTAAATCCAGTTAAACAATACAATAGCATGGACCATTTGAACAATGGAGGTGAGAAAACTGCATTGTCCAATGTTTCCTCTTCACCTGCGAATTTGAGCAGCCAGTTGTCTTCTCAACCTTCATCCATAAACAATGATAGAGGCAGTTGTGCTATTTCAAATACAACAAATTGTACTAACACCACAATGCAGTCGTGCTGGTCTGGTCCCGAGGAAGCAGTTATTGCTACCAATGAAGAGATTCAGAACTTGTGCTCTGATTTATCCTCAGTTAACATTAATAGAGATGTCCAAAGTGAACAGAATGGTATAAACAAACCTAGTAGCCAACCCTCTGACAGTGTGACAGTTAATTCTTCTCCAAGTCATGGGTCACAGAATAAAGCTGACAATTTTAGAGATTCACTTACTACTGTAGCAAGCAAAGCTGCTACATCAGAAAATGGGGTGTGTATTTCAAGGGAACAGTGTGATTGGAGATTGGATTCACAAAATCAGTTAGTATCAGATACTACTGAAGTGGAAGATGATATAACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTTGTCGATCCCCTTACTTGCCAAGATCAGCTAGTTTTGTCAATGTTTCTAACCATTCTAGTCCTCGTCTCCTGCAGCTTGGTGAACCTTGTACTACTATAAATGCCGGTTCTCATTCTGCAGCGGATAAAGTTGGGGATTCTTTATTACATGCAACTAACCTATTTTGTAATGGATACCCTGAGAAATTGGTTGGAAGCAGCTCATATGGTTTGAGTAatgaaagaaatgagCAATGCATTGGAAACAGATTTTCCAGTGAAGCAATTAATGCTAGAAATGATGCTATGGATAAGGGTGAAAGTAGTATAATTTCAAATATACTGtccatggactttgatccttggGATGACTCACTGACATCACCTCAGAATTTGGCTAAACTGTTGGGTGACAACAATGATAACCAGTGTCATCCACTTAAAAATTCTTGGAAAGTGCAAAATAACCAGTCAAGATTTTCTTTTGCAAGGCAGGAGGAAGCCAAATTTCGAACATTTGATGTACATCCATCTTATGGTGTTGGTGAGCAACTGTCAAAGAGCTGTTCACTAATCCAGGATTTTGCAGAAAGAGACTTGTATTTAAATAGGTTGGGAATTGGAAATGGATTCTCTACTGGTAATTTAGAGGAATCTGATAACTTGGGCAATGGCCATTTTGTTACTTCTAATAAGCTTTCTGCTGTTTCAAGAGCTCAAATTACAGCTCCACCTGGATTTTCTGCTCCAAGCAGGGCACCGCCACCGGGTTTCTCCCTTCATGAGAGAGTAGAGCAAGCTTTTGACCCCATATCTGGGAATTCCTTGCTCGAGTCTTCTTCCTTACTTAGAAATTCATATCAGATGCCCACAACTGGTAATATTGGTGGCCCTGGGGACATCGAGTTTAATGATCCTGCTATCTTGGCAGTTGGTAAGGGGAGACTTGAAGGTGCACTAAACAGCTCTGGGTTAGACTTGAGATCAAATTTTGCCCCtcaattaaattactttgaaAATGAGGCCAGACTTCAATTATTGATGCAACAGTCTCTCTCACAGCAGCCAAATCATAGATTCTCTGAAAATGGGAATGCTTTTTCTCAGTTTGGTGATTCTTATGGACTATCGGCAAGGCTCGATCAATCACAAGTCAGTAATTTGGTCCCTTTCTCCCAGTTGTCTCCGCAGCAGTCTAGAAATGTGGTCTTGTCAAATGGACAATGGGATGGGTGGAGTGAGATACAGAGTGGAAACAGTATGGGTGTGGCTGAGCTGCTTAGAAATGAGAGATTTGGGCTTAACAAGTTTTATGCAGGATATGAGGATTCAAAATATAGGATGCAAAATACTGGTGATCTTTACAACAGGACATTTGGGATGTGA 3129 0.404 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILEMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVAETNMERKMKNQKAKSKLSEGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLHRREYFGQYGKVLKVSMSRTAAGVIQQFPNSTCSVYITYSKEEEAIRCIQSVHGFVLEGKPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTSRVQQITGAANNMQEHSGSVLPPPLDDYINSSSGKPIAKNVSNNPSSTLRGSPPNGSSGRSITLPAAAAWMKLCNFSHKLFLFDLPRGTRTTSCQPPSGGLLCPNGPSKPKPDTASSTLAFSSAVAGTIQPSALHGNETKRPTSSDGSHIMLPSPRVKNELLNPVKQYNSMDHLNNGGEKTALSNVSSSPANLSSQLSSQPSSINNDRGSCAISNTTNCTNTTMQSCWSGPEEAVIATNEEIQNLCSDLSSVNINRDVQSEQNGINKPSSQPSDSVTVNSSPSHGSQNKADNFRDSLTTVASKAATSENGVCISREQCDWRLDSQNQLVSDTTEVEDDITSFDNQRLKDPEVCRSPYLPRSASFVNVSNHSSPRLLQLGEPCTTINAGSHSAADKVGDSLLHATNLFCNGYPEKLVGSSSYGLSNERNEQCIGNRFSSEAINARNDAMDKGESSIISNILSMDFDPWDDSLTSPQNLAKLLGDNNDNQCHPLKNSWKVQNNQSRFSFARQEEAKFRTFDVHPSYGVGEQLSKSCSLIQDFAERDLYLNRLGIGNGFSTGNLEESDNLGNGHFVTSNKLSAVSRAQITAPPGFSAPSRAPPPGFSLHERVEQAFDPISGNSLLESSSLLRNSYQMPTTGNIGGPGDIEFNDPAILAVGKGRLEGALNSSGLDLRSNFAPQLNYFENEARLQLLMQQSLSQQPNHRFSENGNAFSQFGDSYGLSARLDQSQVSNLVPFSQLSPQQSRNVVLSNGQWDGWSEIQSGNSMGVAELLRNERFGLNKFYAGYEDSKYRMQNTGDLYNRTFGM 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g1018 1042 MobiDBLite consensus disorder prediction 364 389 - -
Sto7g1018 1042 MobiDBLite consensus disorder prediction 405 445 - -
Sto7g1018 1042 Gene3D - 111 192 IPR012677 -
Sto7g1018 1042 CDD RRM_CNOT4 105 204 IPR034261 -
Sto7g1018 1042 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Sto7g1018 1042 SMART rrm1_1 111 192 IPR000504 GO:0003723
Sto7g1018 1042 MobiDBLite consensus disorder prediction 364 386 - -
Sto7g1018 1042 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Sto7g1018 1042 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Sto7g1018 1042 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1042 - -
Sto7g1018 1042 MobiDBLite consensus disorder prediction 329 352 - -
Sto7g1018 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Sto7g1018 1042 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1042 IPR039780 GO:0004842|GO:0030014
Sto7g1018 1042 SMART rrm2_1 111 192 IPR003954 GO:0003676
Sto7g1018 1042 MobiDBLite consensus disorder prediction 269 296 - -
Sto7g1018 1042 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Sto7g1018 1042 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Sto7g1018 1042 SUPERFAMILY RING/U-box 3 66 - -
Sto7g1018 1042 MobiDBLite consensus disorder prediction 496 530 - -
Sto7g1018 1042 MobiDBLite consensus disorder prediction 268 296 - -
Sto7g1018 1042 Pfam RING/Ubox like zinc-binding domain 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g1018 Sto-Chr7 8214120 8220587 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g1018 K10643 - gmx:100813427 1406.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g1018 7 8214120 8220587 Sto12g0246 12 1484133 1489940 CCT
Sto7g1018 7 8214120 8220587 Sto7g1018 7 8214120 8220587 ECH