Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto12g0246 | ATGAGTGACGAAGGAGAAAGGACTTGTCCTCTTTGTGCAGAAGAGATGGATTTGACTGATCAGCAGTTGAAGCCATGCAAATGTGGCTATGAGATATGTGTTTGGTGTTGGCATCACATAATTGACATGGCTGAGAAGGATGACACAGAGGGGCGATGCCCTGCATGTCGAACTCCTTATGACAAGGAGAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAATTAATACtgagaggaagatgaagaaccAGAAAGCGAAGTCTAAATCTTCTGAAGGGCGAAAGCAACTCAGCAGCGTGCGGGTGATTCAGCGGAATCTTGTCTATATAGTTGGGTTGCCTCTTAATCTGGCAGATGAAGACATTCTTCAGCGGAGAGAGTATTTTGGTCAGTATGGAAAGGTCTTAAAAGTGTCGATGTCTCGGACGGCAGCTGGGGTCATTCAACAGTTTCCAAACAATACATGTAGTGTATATATTACTTACtcaaaggaagaagaagcaatTCGGTGTATTCAAAATGTACATGGATTTGTGTTGGAGGGTAGACCTTTAAGGGCTTGTTTCGGAACCACAAAGTATTGTCATGCATGGCTCCGAAACATGCCTTGCAGCAATCCTGATTGTTTATATCTGCATGAGATTGGCTCTCAAGAAGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGAAGCAGAGTACAACAAATTACTGGTGCTGCAAATAATATGCAACGGCGGTCAGGGAATATGTTGCCACCACCAGCGGATGATTATATGAATAATTCTTCAGGAAAACCCATTGTGAAAAATGCTTCAAGTAACTCTGCTACCATTCTAAGGGGTTCACCTCCTAATGGAAGTTCTGGAAGATCTGTAGCTCTACATCCTGTTGCTGCTGCTGCATGGGGTACTCGAACTACTAACTGTCCACCTCCTGCTGGAGGTTTGTTATGTCCAAATGGACCAGCTAAGGCAAAAGCTGATACTGTTAGTGGCACACTAGCCTTTTCTTCAGCTGTTGCAGGCTCAAGTCAGAACTCTTCCTTGCACAGTGATGTGACAAAGAGGCCACCATCAAGTGATGAAAGTCACACTAACCCTAGAGTACAAAATGAATCATTGAAACCAGAAAAACAATTCAATAGCACGGACAATCTGAGTGATGCAGGCGAAAACACTGCTACTTCTGATGGTCCTCTTACCCCTGGGAATTTGAATAGCCAGTTATCTTCTTTACCATTATCCCGAGATGATGATAGAGGCAGTTGCACTATAACAAACACATCAAGTTCTACAGACTTCTCCGGTCAGTCATGCAGCTCTGGTCCTGAGGAAGCAACTATTGCTACCAATGAAGAGATTCAGAACTTGTGCTCTGATTTGTCGTCCTCTATTAACATCGATAGAAATGGTCAAAATGAATACTATGGTATGGCCAGACCTAATAGCCCTCCTTCTGATCATATCTTGATTAAATCTCCTCAACGTCAATCATTACAGCAGCATAATGCTGAAAAGTTTAGAGATGTACAAATTACATGTGCATCTGTTATAGCTACTCCTTCAGATTATGAGGAGTGTATTCCAAGGGAGCATTCTGATTGGAGATTGGATTCTCAAACTCAAGTACCGTTGGCTACAGCTGAAGTCGAAGATGATATAGCATCTTTTGATAATCAAAGACTCAAAGATCCTGAAGTATTTTGTCATTCTCCTTACTTGCCAAAGTCAACGAGTTTCCTTCATGTCCCAAATCATTCTAGTCATTGTCTTATGCAACATGGTGAGCAATCCCCTGCTGTGAATGTTGATTTTGCATCTGCAGATTCTAAAGTGGGGGATGAGTCTCTATTAAATGCATCAAGCTTACTATGTAATGGTTACCCTGGTAAGTGGGTCAGCAGCCGCACTTCTAGCACCACTGAATGTCTCTTGCCTCAAGAAGAAAGAAGCGAGCATTGCATTGGAAGATTATTCAGTGAAGCAGTTAATGCAGGAAGTGATGCTGCACTGGATAAGGGTGAGAATAGTATAATTTCAAATATATTGTCCATGGACTTCGATGCATGGGACGATTCGCTTACGTCGCCTCAGAATTTGGCTAAGTTGTTGGGTGATAACACTTCTAACCAGTCTGTTCCTTTGAAAAAACCTAGTATCAAAGTGCAAAATAACAGTCAGTCAAGATTCTCTTTTGCAAGGCAGGatgaacccaaaatccaaacattTCATCAACATCCATCTTATGGTATCAGTGAGCAGTTGCCAAATAGAGGTTCTTTCATACAGGAGTTTGCAGAAAGAGACTTCTATATAGATAAGAAGTTGGGTATTACAAATGGCTTCCCTTCCAATAAACTTGAGGAATCTGAAAGTCTAGGCAGCGGTCACTTTGTTGCTTCTAATAAGCTGTCTGGTGTTTCAAGAGCTCAAATTTCAGCTCCACCAGGATTTTCAGTTCCAAGCAGGCCACCACCTCCAGGTTTTTCGTCTTATGAGAGAGTGGAGCAGGCTTTCAATTCCATGTCTGGGAATTCATTGCTTGACCCTTCCTCCTTGTTGAGAAATTCTTATCAGACACCCTCAGCTGGAAATATTGGCAGTACAGGGGACATTGAATTAGTAGATCCTGCTATTTTGGCAGTTGGTACAGGGAGACTTCAAGGTCAAGGTCACGTAAACAGTCCAGGGTTAGACATCAGATCAAGTTTTGCCccacaattaaattactttgaaAATGATGCAAGACTCCAATTGTTGATGCAAAGATCCCTCTCACAGCCACAAAACAGATTTTCTGAAATTGGGAGTGCTTTCTCTCACATCAGTGATTCTTACGGCATCTCTTCGAGGTTAGATCAATCACAAGTCAGCAATTTGGCCCCTTATGCTCAGCTGTCTTTACAGCAGCAGTCTAGAAATGCTATCTTGTCTAATGGCCAATGGGATGGGTGGAGTGAGGTGCAGAGTGGAAGTAGTCTGGGTGTGGCTGAGCTTCTGAGAAATGAAAGACTTGGATTTAACAAATTATATACAGGATATGATGATTCAAAATATAGGATGCCAAATTCTGGGGATCTTTACAATCGAACTTATGGGATGTGA | 3126 | 0.4117 | MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIIDMAEKDDTEGRCPACRTPYDKEKIVGMAANCERLVAEINTERKMKNQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEDILQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGAANNMQRRSGNMLPPPADDYMNNSSGKPIVKNASSNSATILRGSPPNGSSGRSVALHPVAAAAWGTRTTNCPPPAGGLLCPNGPAKAKADTVSGTLAFSSAVAGSSQNSSLHSDVTKRPPSSDESHTNPRVQNESLKPEKQFNSTDNLSDAGENTATSDGPLTPGNLNSQLSSLPLSRDDDRGSCTITNTSSSTDFSGQSCSSGPEEATIATNEEIQNLCSDLSSSINIDRNGQNEYYGMARPNSPPSDHILIKSPQRQSLQQHNAEKFRDVQITCASVIATPSDYEECIPREHSDWRLDSQTQVPLATAEVEDDIASFDNQRLKDPEVFCHSPYLPKSTSFLHVPNHSSHCLMQHGEQSPAVNVDFASADSKVGDESLLNASSLLCNGYPGKWVSSRTSSTTECLLPQEERSEHCIGRLFSEAVNAGSDAALDKGENSIISNILSMDFDAWDDSLTSPQNLAKLLGDNTSNQSVPLKKPSIKVQNNSQSRFSFARQDEPKIQTFHQHPSYGISEQLPNRGSFIQEFAERDFYIDKKLGITNGFPSNKLEESESLGSGHFVASNKLSGVSRAQISAPPGFSVPSRPPPPGFSSYERVEQAFNSMSGNSLLDPSSLLRNSYQTPSAGNIGSTGDIELVDPAILAVGTGRLQGQGHVNSPGLDIRSSFAPQLNYFENDARLQLLMQRSLSQPQNRFSEIGSAFSHISDSYGISSRLDQSQVSNLAPYAQLSLQQQSRNAILSNGQWDGWSEVQSGSSLGVAELLRNERLGFNKLYTGYDDSKYRMPNSGDLYNRTYGM | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto12g0246 | 1041 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 112 | 190 | IPR000504 | GO:0003723 | |
| Sto12g0246 | 1041 | CDD | RRM_CNOT4 | 105 | 204 | IPR034261 | - | |
| Sto12g0246 | 1041 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN | 1 | 1041 | - | - | |
| Sto12g0246 | 1041 | SMART | rrm2_1 | 111 | 192 | IPR003954 | GO:0003676 | |
| Sto12g0246 | 1041 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 77 | IPR013083 | - | |
| Sto12g0246 | 1041 | MobiDBLite | consensus disorder prediction | 347 | 361 | - | - | |
| Sto12g0246 | 1041 | CDD | mRING-HC-C4C4_CNOT4 | 9 | 58 | IPR039515 | - | |
| Sto12g0246 | 1041 | Gene3D | - | 111 | 192 | IPR012677 | - | |
| Sto12g0246 | 1041 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 110 | 196 | IPR000504 | GO:0003723 | |
| Sto12g0246 | 1041 | SMART | rrm1_1 | 111 | 192 | IPR000504 | GO:0003723 | |
| Sto12g0246 | 1041 | SUPERFAMILY | RNA-binding domain, RBD | 104 | 190 | IPR035979 | GO:0003676 | |
| Sto12g0246 | 1041 | MobiDBLite | consensus disorder prediction | 370 | 451 | - | - | |
| Sto12g0246 | 1041 | ProSiteProfiles | Zinc finger RING-type profile. | 9 | 57 | IPR001841 | - | |
| Sto12g0246 | 1041 | PANTHER | CCR4-NOT TRANSCRIPTION COMPLEX RELATED | 1 | 1041 | IPR039780 | GO:0004842|GO:0030014 | |
| Sto12g0246 | 1041 | SUPERFAMILY | RING/U-box | 3 | 66 | - | - | |
| Sto12g0246 | 1041 | MobiDBLite | consensus disorder prediction | 347 | 451 | - | - | |
| Sto12g0246 | 1041 | Pfam | RING/Ubox like zinc-binding domain | 9 | 61 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto12g0246 | Sto-Chr12 | 1484133 | 1489940 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto12g0246 | K10643 | - | gmx:100801880 | 1420.99 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Sto7g1018 | 7 | 8214120 | 8220587 | Sto12g0246 | 12 | 1484133 | 1489940 | CCT | |
| Sto12g0246 | 12 | 1484133 | 1489940 | Sto12g0246 | 12 | 1484133 | 1489940 | ECH |