Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4341 ATGACGACGCTTCATCAAACACCACATTCCTGCTCACATAACATCGTCCAGTTGTCGGATCGCAACACCTCCAACCTTTTCGTTCATTATCATAGCCAACGAATATGCAGCGTACTGCTTTCTTATCAAACTTGCTCCGCAAATGATCAGTCGTCTTCATGCACTCTGCCCAGAACCGTGGTGGCACATTCTTCGCGTGCAGCATGCTTCGACATATTTCTGCCAAATGTCGATTTTTCCGTTCAGCAACTCCATTCTGCTGCGGTGTTCCTGGACAACTCAACTGTCTCCGAATCTTATTCTGTCTCAGCACTCTCGGGCGAAATGGCCCTTTCTCCCGCAGTTGTAACATCGAATTTCCTGTCGATATTTCTGTCTCTCGTTACGGCTCTCTTCATCTTGGCTTTGCTGAGCTCCCCCTGGCTTCGAGCTCCATCTCTGTTGGCTGCCTCGCCAACCACCTCGTCCCCTGGACGCTCATTTTCCAAGTGCTGGAGCTTAGCATCATTTGTGCGTGCGTACAAACCTGTGAGAGTGTCCCATGCTTCTTTGGGCGTCTTCGCCTCCTTAATGTGCTGCAGTATGTCGTCTTCCACCGTCACCGACAACACATACATCGCCTTACCCGCTCTAACCTTCCACTTCTTAAGATCTTCTCCTTCTATTGGAGGAGAGGCACACTCCTTAAAAGTGGAAAACATCTTATTTCAAGGAAACTCAGACTTCCAGAATGTGATGGTCTTTCAGTCATCAACATATGGAAAGGTTCTTGTTTTGGACGGTGTAATTCAGCTCACTGAAAGAGATGAATGTGCCTACCAGGAAATGATCACACATCTTCCTCTATGCTCAATTTCAAATCCCAAAAAGGTTCTGGTTATTGGTGGTGGAGATGGTGGGGTCCTGCGGGAAGTATCACGGCATTCTTCAGTTGAGAAGATTGACATTTGTGAAATTGACAAGATGGTAGTTGATGTCTCCAAACAATTTTTCCCTGATGTAGCAGTAGGTTATGATGATCCACGTGTGACACTTCATATTGGTGATGGTGTTGCATTTTTTAAGGCTGTTTCGCCAGGAACTTATGATGCAATTATAGTAGATTCATCTGACCCTATAGGCCCAGCTCAAGAGCTTTTTGAAAAGCCTTTTTTTGAGTCAGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTGTGAGTATTCAGGCAGAAAGTATATGGCTTCATAAACATATTATTGAGGACATTGTGGCCAATTGTCGCCAGATATTTAAAGGCTCAGTCAACTATGCTTGGACTACAGTTCCAACATACCCTAgTGGGGTGATTGGTTTTATGCTTTGCTCAACCGAAGGACCTCCTGTTGATTTCAAGCATCCAGTAAAATCCATAGAAGCCAATGACACTCTGAAGTCAGTAAGACCCCTGAAGTTTTACAACTCTGAGatTCATACAGCAGCATTTTGCTTGCCATCTTTTGCTAAGAGAGCAATTGAGAATAAAGCAAAATGA 1509 0.4486 MTTLHQTPHSCSHNIVQLSDRNTSNLFVHYHSQRICSVLLSYQTCSANDQSSSCTLPRTVVAHSSRAACFDIFLPNVDFSVQQLHSAAVFLDNSTVSESYSVSALSGEMALSPAVVTSNFLSIFLSLVTALFILALLSSPWLRAPSLLAASPTTSSPGRSFSKCWSLASFVRAYKPVRVSHASLGVFASLMCCSMSSSTVTDNTYIALPALTFHFLRSSPSIGGEAHSLKVENILFQGNSDFQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGYDDPRVTLHIGDGVAFFKAVSPGTYDAIIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSIQAESIWLHKHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVKSIEANDTLKSVRPLKFYNSEIHTAAFCLPSFAKRAIENKAK 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4341 502 PANTHER SPERMIDINE/SPERMINE SYNTHASE 215 501 IPR001045 GO:0003824
Sto6g4341 502 Pfam Spermidine synthase tetramerisation domain 224 267 IPR035246 -
Sto6g4341 502 PANTHER SPERMIDINE SYNTHASE-RELATED 215 501 - -
Sto6g4341 502 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 211 449 IPR030374 -
Sto6g4341 502 Pfam Spermine/spermidine synthase domain 270 457 - -
Sto6g4341 502 Gene3D Spermidine synthase, tetramerisation domain 212 266 IPR037163 -
Sto6g4341 502 CDD AdoMet_MTases 290 401 - -
Sto6g4341 502 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 214 498 IPR029063 -
Sto6g4341 502 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 291 304 IPR030373 -
Sto6g4341 502 TIGRFAM speE: spermidine synthase 225 492 IPR001045 GO:0003824
Sto6g4341 502 Gene3D Vaccinia Virus protein VP39 267 502 IPR029063 -
Sto6g4341 502 Hamap Polyamine aminopropyltransferase [speE]. 211 498 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4341 Sto-Chr6 46058536 46063352 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4341 K00797 - pop:7459055 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4341 6 46058536 46063352 Sto11g1105 11 11114958 11118097 CCT
Sto6g4341 6 46058536 46063352 Sto6g4341 6 46058536 46063352 ECH