Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1105 ATGGCCTCAGATGGCGTTGCTGTGTCTACCGATTTGCCTGTGAAGAGGCcgagagaagatgaagaaaatggggtttCTGCTTCTGTCGTCTCTATGGAGACGGAGGCTAACAAGGACCCTAATGGTATTTCAGCTGTGATTCCTGGGTGGTTCTCCGAAATTAGCCCAATGTGGCCTGGGGAGGCACACTCCTTGAAGGTTGAAAAGGTCTTGTTCCAAGGGAAGTCTGATTATCAGAATGTTATGGTCTTCCAGTCATCAACATATGGTAAGGTTCTCGTTTTGGATGGAGTAATTCAGCTCACCGAAAGGGATGAATGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCAAATCCCAAGAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGGGTCCTGCGAGAAGTATCACGCCATTCTTCAATTGAGAAGATAGACATTTGTGAAATTGACAAGATGGTAGTTGATGTCTCCAAGGAGTTTTTCCCTGAAGTAGCAGTAGGGTATGAGGATCCACGTGTGACACTTCATATTGGTGATGGAGTTGCATTTTTGAAGGAAGTTCCAGAAGGAACCTATGATGCAGTTATAGTGGACTCATCTGACCCAATAGGCCCTGCTCAAGAGCTTTTTGAAAAGCCATTTTTTCAGTCAGTTGCAAAAGCTCTTCGTCCTGGAGGAGTTGTATGTACTCAAGCAGAGAGTATATGGCTTCATATGCATATCATCGaggacatagttgcaaattgtCGCCAGATATTCAAAGGCTCTGTTAACTATGCTTGGACTACAGTTCCTACATACCccagCGGCGTGATCGGTTTTATGCTTTGCTCAACTGAGGGACCTCCTGTTGATTTCAAGCATCCTGTGAATCCTATAGATGAAAATGACACTCAGAAGTCAGTAAGACCACTCAAGTTCTACAACTCTGAGATTCATACAGCATCTTTCTGCTTGCCATCTTTTGCTAAGAAAGTGATTGAATCTAAAGCAAAGTGA 1017 0.4199 MASDGVAVSTDLPVKRPREDEENGVSASVVSMETEANKDPNGISAVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSIEKIDICEIDKMVVDVSKEFFPEVAVGYEDPRVTLHIGDGVAFLKEVPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDENDTQKSVRPLKFYNSEIHTASFCLPSFAKKVIESKAK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1105 338 Gene3D Spermidine synthase, tetramerisation domain 42 100 IPR037163 -
Sto11g1105 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 46 334 IPR029063 -
Sto11g1105 338 PANTHER SPERMIDINE/SPERMINE SYNTHASE 14 337 IPR001045 GO:0003824
Sto11g1105 338 CDD AdoMet_MTases 126 237 - -
Sto11g1105 338 Hamap Polyamine aminopropyltransferase [speE]. 49 334 IPR001045 GO:0003824
Sto11g1105 338 TIGRFAM speE: spermidine synthase 50 328 IPR001045 GO:0003824
Sto11g1105 338 PANTHER SPERMIDINE SYNTHASE-RELATED 14 337 - -
Sto11g1105 338 Gene3D Vaccinia Virus protein VP39 101 338 IPR029063 -
Sto11g1105 338 MobiDBLite consensus disorder prediction 1 26 - -
Sto11g1105 338 Pfam Spermine/spermidine synthase domain 106 293 - -
Sto11g1105 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 48 285 IPR030374 -
Sto11g1105 338 Pfam Spermidine synthase tetramerisation domain 49 103 IPR035246 -
Sto11g1105 338 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 127 140 IPR030373 -
Sto11g1105 338 PIRSF Spermidine_synth 38 338 IPR030668 GO:0006595
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1105 Sto-Chr11 11114958 11118097 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1105 K00797 - twl:120007721 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4341 6 46058536 46063352 Sto11g1105 11 11114958 11118097 CCT
Sto11g1105 11 11114958 11118097 Sto11g1105 11 11114958 11118097 ECH