Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4053 ATGGACGTTCGCCGGCGATCCATTAACTCACCCCCTTCTACCTCGGCCGGCGAACCTCTCAATCTCAAATCCCACAAGCTTTCCCATCCCCTTTACCTCACCAACGCCCTCTTCTTCTCCCTTTTCTTCTCCGTCTCTTACTTTCTCCTTCACAGGTGGCGCGAGAAGATCCGCACCTCCACTCCCCTCCACGTCGTCACCCTCTCCGAGATCGCAGCCATTCTCTCCTTTATCGCCTCCGTCATCTACCTTATCGGCTTCTTCGGCATTGGCTTTATCCACCCAATCACCTCTCGTGCTTCCTCCGACGATGAGCTCGAATTGGACGATGACGTCGACGCCATCATTGCCAAAGACAACTCGCCAATCCCTCTCTCTCAGGACGACGAAGAAATCGTCAAGTCAGTCATATCTGGCTCCATTCCCTCCTACTCGCTGGAATCAAAGCTTGGTGATTGTCGAAGGGCGGCGGTGATTCGAAGAGAGGTGGTGCAGAGATCCACCGGAAGGTCACTCGAGGGTTTGCCCACGGAAGGATTCGATTACGACTCGATATTGGGACAGTGCTGTGAGATGCCGATTGGGTACGTGCAGATCCCGGTGGGGGTGGCGGGTCCATTGTTGCTTGATGGGGCTGAGTACACTGTGCCTATGGCTACCACCGAAGGTTGCCTTGTAGCTAGCACCAACAGAGGTTGTAAGGCCATTTACGTTTCTGGTGGAGCTTCTTCTAGTTTGCTAAGGGATGGGATGACCAGGGCTCCTGTTGTTAGGTTCTCTACTGTGAAGAGAGCTGCTCAATTGAAATTCTTCTTGGAGGATCCTCTCAATTTTGACTCGCTTTCTGTCGTTTTCAATAAGTCAAGCAGATTTGCCAGGTTACAGAGTATTCAGTGTGCAATGGCAGgcaagaatgtatacatcagatTCACTTGCAGCACTGGGGATGCTATGGGGATGAACATGGTATCCAAAGGCGTCCAAAATGTCCTGGACTTTCTGCAGGATGATTTCCCAGACATGGATGTTATTGGCATCTCTGGAAATTTCTGTTCGGACAAGAAAGCGGCAGCTGTAAACTGGATTGAAGGTCGTGGTAAGTCTGTGGTATGTGAGGCTATAATCAAGGAAGAGGTGGTAAAGAAAGTATTGAAGACTAACGTAGAGGCCTTGGTGGAGCTTAACATGCTTAAAAACCTTACTGGTTCAGCCATGGCTGGTGCTCTTGGTGGGTTCAACGCCCATGCAAGCAATATCGTTTCTGCTATCTACATAGCCACTGGTCAGGACCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTGTCAACAACGGCAAGGATCTTCACATCTCTGTCACCATGCCTTGCATTGAGGTGGGCACAGTTGGAGGGGGTACCCAGCTCGCATCTCAGTCAGCTTGTCTTAATTTACTTGGTGTGAAGGGAGCCAGCAAAGAGTCTCCTGGTGCAAATTCTAGGCTTCTGGCCACCGTAGTAGCCGGTGCAGTACTCGCCGGAGAGCTTTCGCTCATGTCAGCAATTTCTGCAGGGCAGCTTGTTAGGAGCCACATGAAATACAACAGATCTAGCAGGGATGTCTCAAAAGTTGTCTCCTGA 1632 0.5025 MDVRRRSINSPPSTSAGEPLNLKSHKLSHPLYLTNALFFSLFFSVSYFLLHRWREKIRTSTPLHVVTLSEIAAILSFIASVIYLIGFFGIGFIHPITSRASSDDELELDDDVDAIIAKDNSPIPLSQDDEEIVKSVISGSIPSYSLESKLGDCRRAAVIRREVVQRSTGRSLEGLPTEGFDYDSILGQCCEMPIGYVQIPVGVAGPLLLDGAEYTVPMATTEGCLVASTNRGCKAIYVSGGASSSLLRDGMTRAPVVRFSTVKRAAQLKFFLEDPLNFDSLSVVFNKSSRFARLQSIQCAMAGKNVYIRFTCSTGDAMGMNMVSKGVQNVLDFLQDDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVEALVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNNGKDLHISVTMPCIEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATVVAGAVLAGELSLMSAISAGQLVRSHMKYNRSSRDVSKVVS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4053 543 Pfam Hydroxymethylglutaryl-coenzyme A reductase 158 533 IPR002202 GO:0004420|GO:0015936
Sto6g4053 543 Gene3D - 200 528 IPR023074 GO:0004420
Sto6g4053 543 Gene3D - 125 199 IPR023282 GO:0004420
Sto6g4053 543 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 250 366 IPR009023 -
Sto6g4053 543 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 129 533 IPR004554 GO:0004420|GO:0005515|GO:0008299
Sto6g4053 543 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 16 543 - -
Sto6g4053 543 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 518 531 IPR023076 GO:0004420
Sto6g4053 543 Gene3D - 250 366 IPR009023 -
Sto6g4053 543 CDD HMG-CoA_reductase_classI 130 533 IPR004554 GO:0004420|GO:0005515|GO:0008299
Sto6g4053 543 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 16 543 IPR002202 GO:0004420|GO:0015936
Sto6g4053 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 189 210 IPR002202 GO:0004420|GO:0015936
Sto6g4053 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 216 236 IPR002202 GO:0004420|GO:0015936
Sto6g4053 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 307 325 IPR002202 GO:0004420|GO:0015936
Sto6g4053 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 347 372 IPR002202 GO:0004420|GO:0015936
Sto6g4053 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 398 424 IPR002202 GO:0004420|GO:0015936
Sto6g4053 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 452 473 IPR002202 GO:0004420|GO:0015936
Sto6g4053 543 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 129 533 IPR002202 GO:0004420|GO:0015936
Sto6g4053 543 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 309 323 IPR023076 GO:0004420
Sto6g4053 543 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 464 471 IPR023076 GO:0004420
Sto6g4053 543 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 123 522 IPR009029 GO:0015936|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4053 Sto-Chr6 44197897 44201185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4053 2 539 Lipid Metabolism Gene Families AT1G76490 73.166 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4053 K00021 - zju:107424275 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4053 6 44197897 44201185 Sto11g1370 11 13225532 13227989 CCT
Sto6g4053 6 44197897 44201185 Sto11g1370 11 13225532 13227989 ECH
Sto6g4053 6 44197897 44201185 Sto6g4053 6 44197897 44201185 ECH