Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1370 ATGGACGTTCGCCGGCGACCCCTCCGTCTCCGTCCAACCTCTGTCGGCGAACCTTCCAAGTCCCGCCACCAACCTAACCCTTCTTCTCCCTCTCATTCACAACCACCGCCATTGCTGCATCTATACCTTGCCAacgtcatcttcttcttcatcttcttttctGTCGCCTACTTCCTCCTTCATCGATGGCGCGAGAAGATCCGTACGTCAACGCCTCTCCACGTCATCACCCTCTCCGAGATTGCAGCCGTTGTCTCGCTTCTCGCCTCCTTCATCTACCTTCTGGGTTTCTTCGGCATTGGCATCCTTTACCCTATCACTTCTcgaccttcttcttcttcggctTCTGACGACGATGACGACCTTAAATTGGACGGTCGTGACGCCACCCTCATTGGCCCCTGCTCGGCTGGGGTCATTGACTGCTCTGTCATCTCTGCACCTCCGAAGAAAATCTTCGATAACATTCCCCTCTCTTCCTCCCAAGAGGACGAAGAAATCGTCGAGTCGGTGATATCCGGGTCGATTCCTTCGTACTCGCTGGAATCGAAGCTCGGGGATTGTCGAAGAGCGGCTGCGATTAGAAGAGAAGCGGTGCAGAAAATGACAGGAAGGTCACTGAAGGGATTACCCATTGAAGGGTTCGATTACGAGTCGATATTGGGACAGTGTTGTGAGATGCCGATTGGGTTCGTTCAGATACCTGTGGGGGTTGCGGGGCCGTTGCtgcttgatgggaatgagttcaCAGTGCCTATGGCCACTACGGAGGGTTGCCTTGTGGCTAGCACCAATAGAGGTTGTAAGGCCATTTATGTTTCAGGTGGTGCTTCCTCTGTGTTGCTCAGAGATGGCATGACCAGGGCTCCTGTTGTCAGATTCTCCTCTGCCAAAAGGGCTGCTAAGTTGAAGGTCTTCTTGGAGGATTCTCTGAATTTCGACTCACTTTCTGTTGTTTTCAACAAGTCAAGCAGATTTGCCAGGTTACAGAGTATTCAGTGTGCAATAGCGGGCAAGAATTTATACATTAGATTCAGTTGCAGCACTGGGGATGCCATGGGGATGAACATGGTATCTAAAGGCGTCCAAAACGTCCTTGATTTCCTTAAGAACGACTTCCCTGACATGGATGTGATTGGCATATCTGGAAATTTCTGTTCAGACAAAAAGGCCGCAGCTGTAAACTGGATTGAAGGAAGAGGAAAGTCTGTGGTCTGCGAGGCTATAATCAAGGAGGAGGTGGTAAAGAAAGTTTTGAAGACTAGCGTGGAGGCCCTGGTGGAGCTAAACATGCTTAAAAACCTTACTGGCTCGGCTGTGGCCGGTGCTCTTGGTGGGTTCAATGCCCATGCTAGCAATATTGTCTCTGCCATCTACCTGGCCACTGGTCAGGATCCTGCTCAGAATGTGGAGAGTTCTCAGTGTATCACTATGATGGAAGCAGTAAACGATGGCAAGGACCTTCACATTTCTGTTACCATGCCTTCTGTTGAGGTACAGTTAGATCTAAGTTCTCGAGTCCTTCTTATCTTTGAGGTTTCTGATATTGTTTCAAGCTGCCAATGTGTTGAGCCTTTAATATCTGATGGTGTGAGCCATTCCCTCAAAGGGGAGAAGATGTCATCAAAATATGTCTGCATTATAATGACAGATTTAGGTGGCTTTTGGTATACTGTGATCTCAAATCCTATGATATCTTACTATGGTATGATAGAATAG 1719 0.4689 MDVRRRPLRLRPTSVGEPSKSRHQPNPSSPSHSQPPPLLHLYLANVIFFFIFFSVAYFLLHRWREKIRTSTPLHVITLSEIAAVVSLLASFIYLLGFFGIGILYPITSRPSSSSASDDDDDLKLDGRDATLIGPCSAGVIDCSVISAPPKKIFDNIPLSSSQEDEEIVESVISGSIPSYSLESKLGDCRRAAAIRREAVQKMTGRSLKGLPIEGFDYESILGQCCEMPIGFVQIPVGVAGPLLLDGNEFTVPMATTEGCLVASTNRGCKAIYVSGGASSVLLRDGMTRAPVVRFSSAKRAAKLKVFLEDSLNFDSLSVVFNKSSRFARLQSIQCAIAGKNLYIRFSCSTGDAMGMNMVSKGVQNVLDFLKNDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTSVEALVELNMLKNLTGSAVAGALGGFNAHASNIVSAIYLATGQDPAQNVESSQCITMMEAVNDGKDLHISVTMPSVEVQLDLSSRVLLIFEVSDIVSSCQCVEPLISDGVSHSLKGEKMSSKYVCIIMTDLGGFWYTVISNPMISYYGMIE 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1370 572 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 344 358 IPR023076 GO:0004420
Sto11g1370 572 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 164 499 IPR002202 GO:0004420|GO:0015936
Sto11g1370 572 CDD HMG-CoA_reductase_classI 165 499 IPR004554 GO:0004420|GO:0005515|GO:0008299
Sto11g1370 572 MobiDBLite consensus disorder prediction 1 33 - -
Sto11g1370 572 Gene3D - 159 234 IPR023282 GO:0004420
Sto11g1370 572 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 161 499 IPR009029 GO:0015936|GO:0016616
Sto11g1370 572 Gene3D - 235 499 IPR023074 GO:0004420
Sto11g1370 572 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 499 - -
Sto11g1370 572 Gene3D - 285 401 IPR009023 -
Sto11g1370 572 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 499 IPR002202 GO:0004420|GO:0015936
Sto11g1370 572 Pfam Hydroxymethylglutaryl-coenzyme A reductase 192 499 IPR002202 GO:0004420|GO:0015936
Sto11g1370 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 224 245 IPR002202 GO:0004420|GO:0015936
Sto11g1370 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 251 271 IPR002202 GO:0004420|GO:0015936
Sto11g1370 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 342 360 IPR002202 GO:0004420|GO:0015936
Sto11g1370 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 382 407 IPR002202 GO:0004420|GO:0015936
Sto11g1370 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 433 459 IPR002202 GO:0004420|GO:0015936
Sto11g1370 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 487 508 IPR002202 GO:0004420|GO:0015936
Sto11g1370 572 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 285 401 IPR009023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1370 Sto-Chr11 13225532 13227989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1370 1 499 Lipid Metabolism Gene Families AT1G76490 66.667 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1370 K00021 - nnu:104606863 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4053 6 44197897 44201185 Sto11g1370 11 13225532 13227989 CCT
Sto6g4053 6 44197897 44201185 Sto11g1370 11 13225532 13227989 ECH
Sto11g1370 11 13225532 13227989 Sto11g1370 11 13225532 13227989 ECH