Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4003 ATGGCGAGAAGATCCGCACCGCTCCTCAAACAACTCTTCACTACATCACAATCGTTCAGATTCAACCCCAATCGATCCGTCACGTACATGCCCCGGCCCGGCGATGGGACTCCACGCGCTGTCACCCTTATACCGGGAGATGGAATAGGGCCTTTGGTTACCGGCGCCGTCGAACAAGTGATGGAGGCGATGCACGCTCCGGTGTACTTCGAGAAATATGAAGTGCGAGGTGACATGAACAGAATGCCGCAGGAGGTGATCGATTCGATAAAGAAGAACCAAGTGTGCCTGAAAGGTGGTCTGGCTACGCCTGTGGGCGGCGGTGTGAGCTCGTTGAACATGCAGCTCAGGAGAGAGCTTGATCTATACGCTTCGCTCGTCAATTGCTTTAATCTTCCAGGGTTGCCCACGAGGCACGAGAATGTTGATATTGTCGTGATTAGGGAGAACACCGAGGGGGAGTACGCTGGCTTGGAACACGAGGTCGTTCCCGGCGTTGTCGAAAGCCTTAAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAGATATGCATTCGAGTATGCTTACCTAAATAACAGAAAGAAAGTGACTGCTGTGCACAAAGCAAACATTATGAAGCTTGCAGATGGTTTGTTTCTGGAATCTTGTCGAGAGGTTGCAACAAATTATCCTGGAATCACATATAACGAAATTATTGTGGATAATTGCTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACCCCCAATCTTTATGGAAATCTTGTTGCAAATACAGCAGCTGGTATTGCAGGAGGCACAGGAGTTATGCCAGGAGGTAACGTTGGGGCTGATCATGCTGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTTGGTAATGAAAAATTAGTGGAACAAAAGACAGCAAACCCTGTGGCACTGCTTCTCTCATCTGCCATGATGCTTAGACATCTGCAGTTTCCTGCATTTGCCGACCGATTGGAAACTGCTGTGAAAGGAGTGATTCAAGAAGGAAAGTACTGCACAAAGGACCTCGGAGGTTTAAGTACCACCCAAGAGGTTGTTGATGCAGTTATAGCTGCATTAGACTGA 1107 0.4815 MARRSAPLLKQLFTTSQSFRFNPNRSVTYMPRPGDGTPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYEVRGDMNRMPQEVIDSIKKNQVCLKGGLATPVGGGVSSLNMQLRRELDLYASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIARYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATNYPGITYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNEKLVEQKTANPVALLLSSAMMLRHLQFPAFADRLETAVKGVIQEGKYCTKDLGGLSTTQEVVDAVIAALD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4003 368 PANTHER ISOCITRATE DEHYDROGENASE [NAD] REGULATORY SUBUNIT 3, MITOCHONDRIAL 1 366 - -
Sto6g4003 368 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 37 366 IPR004434 GO:0006099
Sto6g4003 368 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 39 367 - -
Sto6g4003 368 Gene3D Isopropylmalate Dehydrogenase 28 367 - -
Sto6g4003 368 Pfam Isocitrate/isopropylmalate dehydrogenase 41 363 IPR024084 -
Sto6g4003 368 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 1 366 - -
Sto6g4003 368 SMART Iso_dh_2 40 363 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4003 Sto-Chr6 43884582 43887995 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4003 K00030 - tcc:18610664 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4003 6 43884582 43887995 Sto11g1420 11 13571812 13574836 CCT
Sto6g4003 6 43884582 43887995 Sto6g4003 6 43884582 43887995 ECH