Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1420 ATGGCGAGAAGATCAGTATCAGTTCTTAAACAACTCTCCACAATATCACAATCGCCGGACGCTCCCAACATCTTTACCTCTTGCTCCAACTTGATTCCCGCACGATCTGTCACTTATATGCCCCGTCCCGGAGACGGGGCTCCACGGGCCGTGACACTGATACCCGGCGATGGAATCGGACCTCTGGTTACCGGCGCCGTTGAGCAAGTGATGGAGGCAATACACGCGCCGGTGTACTTCGAGAAATATGAAGTGCGCGGGGACATGAAGAAAGTGCCGCAAGAGGTGATTGATTCCATAAAGAAGAACAAAGTGTGTTTGAAGGGTGGATTGGCTACACCTATGGGCGGTGGTGTGAGCTCGTTGAACATGCAGCTGAGGAGAGAGCTCGACCTGTATGCTTCGCTAGTGAATTGCTGTAATCTTCCTGGGTTGCCGACGAGGCACGACAATGTCGATATCGTCGTCATCAGGGAGAACACGGAAGGGGAGTATTCTGGCCTGGAACACGAGGTCGTTCCGGGTGTCGTTGAAAGCCTTAAGGTAATAACGAAGTTCTGTTCAGAGCGCATCGCCAAATATGCTTTCGAGTATGCTTACCTAAACAACAGAAAGAAAGTGACTGCTGTACATAAAGCAAACATTATGAAGCTAGCAGATGGTTTATTCTTGGAATCTTGTAGAGAAGTTGCCACAAAGTACCCTGGAATAACGTATAACGAAATTATTGTGGATAACTGTTGCATGCAGCTTGTGTCAAAGCCTGAGCAGTTTGATGTCATGGTTACCCCTAATCTTTATGGAAATCTAGTTGCAAATACAGCAGCAGGTATTGCTGGAGGCACTGGAGTAATGCCAGGAGGAAATGTTGGGGCTGATCATGCTGTGTTTGAGCAAGGTGCTTCAGCTGGAAATGTTGGTAATGATAACATAGTggaacaaaagaaagcaaaccCAGTAGCACTGCTTCTCTCATCGGCCATGATGCTCAGACATCTCCAGTTTCCTGCATTTGCCGACCGATTGGAAACTGCAGTGAAACGAGTCATTCTCGAGGGAAAATACCGAACAAAAGACCTTGGTGGGCAATGCACCACCCAAGAGATTGTTGATGCAGTACTAAATGCTTTAGACTGA 1137 0.4697 MARRSVSVLKQLSTISQSPDAPNIFTSCSNLIPARSVTYMPRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMEAIHAPVYFEKYEVRGDMKKVPQEVIDSIKKNKVCLKGGLATPMGGGVSSLNMQLRRELDLYASLVNCCNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGITYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNDNIVEQKKANPVALLLSSAMMLRHLQFPAFADRLETAVKRVILEGKYRTKDLGGQCTTQEIVDAVLNALD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1420 378 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 1 375 - -
Sto11g1420 378 Gene3D Isopropylmalate Dehydrogenase 38 378 - -
Sto11g1420 378 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 47 376 IPR004434 GO:0006099
Sto11g1420 378 SMART Iso_dh_2 50 373 IPR024084 -
Sto11g1420 378 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 1 375 - -
Sto11g1420 378 Pfam Isocitrate/isopropylmalate dehydrogenase 51 373 IPR024084 -
Sto11g1420 378 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 50 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1420 Sto-Chr11 13571812 13574836 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1420 K00030 - csv:101214612 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4003 6 43884582 43887995 Sto11g1420 11 13571812 13574836 CCT
Sto11g1420 11 13571812 13574836 Sto11g1420 11 13571812 13574836 ECH