Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3815 ATGTGGCGGTGCGTAGCTCGTGGACTTGGTGTACCAGCTTCCAAGAGATCGATTCCTAATGATTCACTTAGATCACACATTTCTAGATTTTTCTCTACTGGGGGGAACTCCTCATATACTGTGGTGGATCATACTTATGACGCAGTAGTTGTAGGTGCCGGTGGTGCAGGATTGAGAGCTGCTATTGGACTTTCAGAGCATGGCTTCAATACTGCTTGCATTACTAAGCTCTTCCCAACTCGTTCACATACTGTTGCAGCTCAGGGCGGTATAAATGCTGCACTGGGAAATATGACTGAGGATGACTGGAGGTGGCACATGTACGACACAGTCAAGGGAAGTGATTGGTTAGGAGATCAGGATGCCATCCAATATATGTGCAGTCAAAGCCTGGACTTTGGGAAAGGTGGACAGGCATACCGTTGTGCATGCGCTGCTGATCGAACTGGACATGCTTTATTACACACTCTCTACGGCCAAGCCATGAAACATAATACACAATTTTTTGTGGAATACTTTGCATTGGATCTTCTAATGAATAGTGATGGCAGTTGCCAAGGGGTGATTGCGTTGAATATGGAGGATGGAACATTACATCGATTCCAAGCTGCTTCAACAATTTTGGCCACAGGGGGTTATGGTAGAGCCTACTTTTCTGCAACCTCAGCACATACATGCACTGGAGATGGCAATGCTATGGTTTCACGTGCGGGACTCCCACTACAGgatttggagtttgtaCAATTTCACCCCACAGGTATATATGGAGCTGGTTGCCTAATCACAGAAGGTTCTCGAGGGGAGGGTGGAATTCTTAGGAATAGTGAGGGTGAACGATTCATGGAACGATATGCCCCTACTGCAAAGGATCTTGCGTCAAGAGATGTTGTTTCAAGATCAATGACTATGGAGATTCGGGAAGGTCGTGGTGTAGGACCTCTGAAAGATCACATCTATCTACACTTAAATCACTTGCCCCCAGATGTGCTCAAGGAAAGGCTTCCTGGTATTTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATCCCTGTTTTGCCAACTGTACACTATAACATGGGTGGTATTCCCACAAATCATCATGGAGAGGTGGTCACAGTTCAAGGTGATAATCCAGATGCAGTAGTACCTGGATTGATGGCTGCTGGGGAAGCTGCCTGTGCTTCAGTCCATGGTGCCAATAGGCTTGGTGCTAATTCACTTCTGGACATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCCAAAGACCAGGAGCAAAACAAAAGCCTTTGGAAAAGGATGCTGGTCAAAAGACAATTGCATGGTTGGATAAATTGAGAAACTCAAATGGATCATTGCCAACTTCAAACATTCGGTTAAATATGCAACGAGTAATGCAGAACAATGCTGCTGTGTTCCGTACACAGGAAACATTAGAAGAAGGTTGTCAATTAATTGACAAGGCATGGGAGAGTTTTCATGACGTCAAGTTGAAGGACCGGAGTCTGATATGGAACTCTGACTTGATTGAGACTATTGAGTTGGAAAACCTTTTGATAAATGCCTGCATTACCATGCACTCTGCTGAAGCCAGGAAGGAGAGTAGGGGAGCACATGCCCGGGAGGACTTCACGAAAAGAGATGATGAGAATTGGATGAAGCATACAGTAGGATATTGGGAGAATAAGAAGGTCCGCTTAGATTACAGGCCGGTGCACATGAATACGTTGGATGATGAGATTGAAACGTTCCCTCCTAAAGCTCGTGTGTATTAG 1800 0.4478 MWRCVARGLGVPASKRSIPNDSLRSHISRFFSTGGNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCSQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTVQGDNPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGAKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSNIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLKDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTVGYWENKKVRLDYRPVHMNTLDDEIETFPPKARVY 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3815 599 PIRSF SDHA_APRA_LASPO 36 129 - -
Sto6g3815 599 PIRSF SDHA_APRA_LASPO 135 588 - -
Sto6g3815 599 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 81 90 IPR003952 GO:0016491
Sto6g3815 599 SUPERFAMILY FAD/NAD(P)-binding domain 39 433 IPR036188 -
Sto6g3815 599 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 133 599 IPR014006 GO:0016627|GO:0022900|GO:0050660
Sto6g3815 599 Gene3D - 131 423 IPR036188 -
Sto6g3815 599 Gene3D - 31 130 IPR036188 -
Sto6g3815 599 Pfam Fumarate reductase flavoprotein C-term 468 599 IPR015939 GO:0016491
Sto6g3815 599 Gene3D - 439 549 - -
Sto6g3815 599 PRINTS Pyridine nucleotide disulphide reductase class-I signature 47 69 - -
Sto6g3815 599 PRINTS Pyridine nucleotide disulphide reductase class-I signature 206 215 - -
Sto6g3815 599 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 254 357 IPR027477 -
Sto6g3815 599 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 129 599 IPR030664 -
Sto6g3815 599 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 3 129 IPR030664 -
Sto6g3815 599 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 458 599 IPR037099 GO:0016491
Sto6g3815 599 Pfam FAD binding domain 136 412 IPR003953 -
Sto6g3815 599 Pfam FAD binding domain 47 130 IPR003953 -
Sto6g3815 599 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 244 362 IPR027477 -
Sto6g3815 599 Gene3D succinate dehydrogenase protein domain 550 599 - -
Sto6g3815 599 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 129 599 - -
Sto6g3815 599 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 3 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3815 Sto-Chr6 42763104 42769139 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3815 K00234 - jre:108995347 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3815 6 42763104 42769139 Sto11g1556 11 14690438 14697067 CCT
Sto6g3815 6 42763104 42769139 Sto6g3815 6 42763104 42769139 ECH