Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1556 ATGTGGCGCTTCGTCGCTCGTGGTCTTAAGAGATCCAATCCTAATGATTCACTGAGATCCAACCTTTCAAGATTCTTCTCTACCGGGGGAAACTCCTCCTATACTGTGGTGGATCATACTTATGATGCAGTTGTCGTAGGTGCTGGTGGTGCAGGATTGAGAGCTGCTATTGGACTTTCGGAACATGGGTTCAATACTGCTTGCATTACTAAGCTTTTCCCAACTCGTTCACATACTGTTGCTGCTCAGGGTGGTATTAATGCAGCATTGGGAAATATGACAGAAGATGACTGGAGGTGGCACATGTATGATACAGTCAAGGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAGTATATGTGTAGGGAGGCACCAAAAGCAGTCATTGAGCTTGAAAATTATGGATTACCATTTTCCCGAACTGATGATGGAAAAATATACCAGCGTGCATTTGGTGGTCAAAGCCTGGATTTTGGAAAAGGTGGTCAGGCTTACCGTTGTGCCTGTGCTGCTGATCGAACTGGACATGCTTTATTGCACACTCTTTATGGCCAGGCTATGAAACACAATACCCAATTTTTCGTGGAATATTTTGCATTGGATCTTTTAATGAATAGTGATGGTAGTTGCCAAGGGGTAATTGCATTGAATATGGAAGATGGAACATTACATAGGTTCCAAGCTGCTTCAACGATTTTGGCCACAGGGGGTTATGGCAGAGCATACTTTTCTGCTACCTCGGCACATACATGCACCGGAGATGGCAATGCTATGGTTGCACGTGCCGGGCTTCCACTTCAGGATTTGGAATTTGTGCAATTTCATCCAACAGGTATATATGGAGCTGGTTGCCTTATTACTGAAGGTTCTCGAGGAGAAGGTGGAATTCTCAGGAACAGTGAGGGTGAGCGATTTATGGAACGGTATGCCCCTACCGCAAAGGATCTTGCATCAAGAGATGTTGTCTCAAGATCAATGACTATGGAGATTCGGGAAGGTCGTGGTGTAGGGCCTCTGAAAGATCACATCTATCTCCACTTGAATCATTTACCCCCGGATGTGCTGAAGGAGAGGCTTCCTGGAATCTCTGAAACTGCTGCCATTTTTGCTGGTGTGGATGTTACAAAAGAACCTATCCCTGTTTTGCCAACAGTGCACTATAACATGGGTGGTATTCCCACAAACCATCATGGAGAGGTGGTTACTCCTAAAGGTGAAGATCCAGATGCAGTAATACCTGGGTTGATGGCTGCTGGGGAAGCCGCATGTGCATCTGTCCATGGTGCCAATAGGCTTGGCGCAAATTCCCTTCTAGACATTGTTGTTTTCGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAAAAGCCTTTAGAGAAAGATGCTGGTCAAAAAACAATTGCATGGCTAGATAAATTAAGAAATTCGAATGGTTCGTTACCCACTTCTAATATTCGGTTGAATATGCAACGAGTAATGCAAAACAATGCTGCTGTGTTCCGTACACAGGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAGCATGGGAAAGCTTTCATGATGTCAAGTTGAAGGACCGGAGTTTAATATGGAACTCTGACTTGATTGAGACAATTGAATTGGAAAACCTTTTGATAAATGCCTGCATCACCATGCACTCTGCTGAAGCAAGGAAGGAGAGTAGAGGAGCTCATGCCCGTGAGGATTTCACGAAAAGAGATGATGAGAACTGGATGAAGCACACAGTGGGATATTGGGAGAACGAGAAAGTCCGGTTAGATTACAGGCCCGTGCACATGAATACCTTGGATGACGAGATGGAGACAATCCCTCCTAAAGCTCGTGTGTATTGA 1878 0.4462 MWRFVARGLKRSNPNDSLRSNLSRFFSTGGNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTDDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTPKGEDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSNIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLKDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTVGYWENEKVRLDYRPVHMNTLDDEMETIPPKARVY 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1556 625 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 39 625 IPR011281 GO:0006099|GO:0016627|GO:0050660
Sto11g1556 625 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 280 383 IPR027477 -
Sto11g1556 625 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 6 625 - -
Sto11g1556 625 Gene3D succinate dehydrogenase protein domain 576 625 - -
Sto11g1556 625 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 6 625 IPR030664 -
Sto11g1556 625 PIRSF SDHA_APRA_LASPO 31 615 - -
Sto11g1556 625 Gene3D - 465 575 - -
Sto11g1556 625 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 484 625 IPR037099 GO:0016491
Sto11g1556 625 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 270 388 IPR027477 -
Sto11g1556 625 Gene3D - 42 449 IPR036188 -
Sto11g1556 625 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 42 625 IPR014006 GO:0016627|GO:0022900|GO:0050660
Sto11g1556 625 SUPERFAMILY FAD/NAD(P)-binding domain 34 461 IPR036188 -
Sto11g1556 625 Pfam Fumarate reductase flavoprotein C-term 494 625 IPR015939 GO:0016491
Sto11g1556 625 Pfam FAD binding domain 42 438 IPR003953 -
Sto11g1556 625 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 76 85 IPR003952 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1556 Sto-Chr11 14690438 14697067 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1556 K00234 - rcu:8283123 1196.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3815 6 42763104 42769139 Sto11g1556 11 14690438 14697067 CCT
Sto11g1556 11 14690438 14697067 Sto11g1556 11 14690438 14697067 ECH