Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3465 ATGGTTTCAGTCAGTGTTAGCGAGGTTGAAGCACTGTTTGAGCTTTTTAAGAGCATCAGCAGTTCTGTCATTGATGATGGATTAATAAGCGAGGAAGAGTTTGAGTTGGCAATTTTCAATAATAAGAAAAGGGGTAATCTCTTTGCAAATCGGGTCTTTGACATGTTTGATGTTAAGAAGAAGGGAGCCATTGATTTTGGTGACTTTGTTAGATCACTCAGCGTCTTCCACCCTAATGCATCACAACAAGACAAGATAGATTTTTCATTTAGGctttataatttgaaaaatacagGCTTTATAGAGCGCCAAGAGGTCAAACAAATGTTAGTTGCCCTTCTTTCCGAATCTGACATGAAGTTGGCAGATGAGACAATAGAAGCAATTATCGATAAGACTTTCTCGGATGCAGATATAAACCAAGATGGGAGGATAGACAAGTTCGAGTGGCAAAACTTGGTTTTAAAGAATCCCTCATTACTAAAAGTCATGACCCTACCCTACCTCAAGGACATAACTATCACCTTCCCAAGTTTTGTATTTAATTCTCAGGTTGAAGAAATTACAAATTGA 573 0.37 MVSVSVSEVEALFELFKSISSSVIDDGLISEEEFELAIFNNKKRGNLFANRVFDMFDVKKKGAIDFGDFVRSLSVFHPNASQQDKIDFSFRLYNLKNTGFIERQEVKQMLVALLSESDMKLADETIEAIIDKTFSDADINQDGRIDKFEWQNLVLKNPSLLKVMTLPYLKDITITFPSFVFNSQVEEITN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3465 190 SUPERFAMILY EF-hand 4 180 IPR011992 -
Sto6g3465 190 PANTHER CALCINEURIN B 3 189 IPR045198 GO:0005509|GO:0019722|GO:0019900
Sto6g3465 190 PANTHER BNAC07G34450D PROTEIN 3 189 - -
Sto6g3465 190 Gene3D - 2 188 - -
Sto6g3465 190 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Sto6g3465 190 ProSiteProfiles EF-hand calcium-binding domain profile. 81 116 IPR002048 GO:0005509
Sto6g3465 190 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Sto6g3465 190 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Sto6g3465 190 PRINTS Recoverin family signature 52 73 - -
Sto6g3465 190 PRINTS Recoverin family signature 99 117 - -
Sto6g3465 190 PRINTS Recoverin family signature 145 165 - -
Sto6g3465 190 Pfam EF hand 130 154 IPR002048 GO:0005509
Sto6g3465 190 SMART efh_1 85 113 IPR002048 GO:0005509
Sto6g3465 190 SMART efh_1 48 76 IPR002048 GO:0005509
Sto6g3465 190 SMART efh_1 129 157 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3465 Sto-Chr6 40316868 40318928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3465 2 190 EF-hand Containing Proteins AT4G17615 75.661 3.52e-107 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3465 K06268 - vvi:100260894 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3465 6 40316868 40318928 Sto11g1865 11 17410953 17413854 CCT
Sto6g3465 6 40316868 40318928 Sto6g3465 6 40316868 40318928 ECH