Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1865 ATGGGTTGTTTCAGCTCTACGGCGAGAAGACAATTTCCTGGGCATGAGGATCCAGTAACTCTTGCGTCGGAGACTGCTTTCAGTGTCAGCGAGGTTGAAGCACTGTTTGAGCTATTTAAGAGCATCAGCGGTTCTGTCGTTGATGATGGATTAATAAGCAAGGAAGAATTTCAGTTGGCAATTTTCAAGATTAGGAAGAAGGAGAATCTCTTTGCAAATCGGatctttgatctgtttgatgTTAAGAAGAAGGGAGTCATTGACTTTAGCGATTTTGTTAGATCACTCAATGTCTTCCACCCAAATGCACCGCTAGAAGACAAGATAGATTTTTCATTCAGGCTCTACGATTTGGACAGTACAGGCTTTATAGAGCGCCAAGAGGTCAAGCAAATGTTAATTGCACTTCTTTGTGAGTCTGAAATGAAGCTAGCGGATGAGACCATAGAAGGAATTCTTGATAAGACATTTTTGGATGCCGATCTGGACCATGATGGGAGAATAGACAAGTCAGAATGGAAAAACTTTGTTTCGAAAAATCCATCACTACTAAAAATCATGACCCTACCCTACCTAAGGGACATAACCACCACCTTCCCAAGTTTTGTATTTAATTCTGAGGTTGATGAGATTGCTACTTGA 642 0.4003 MGCFSSTARRQFPGHEDPVTLASETAFSVSEVEALFELFKSISGSVVDDGLISKEEFQLAIFKIRKKENLFANRIFDLFDVKKKGVIDFSDFVRSLNVFHPNAPLEDKIDFSFRLYDLDSTGFIERQEVKQMLIALLCESEMKLADETIEGILDKTFLDADLDHDGRIDKSEWKNFVSKNPSLLKIMTLPYLRDITTTFPSFVFNSEVDEIAT 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1865 213 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Sto11g1865 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Sto11g1865 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Sto11g1865 213 SUPERFAMILY EF-hand 22 203 IPR011992 -
Sto11g1865 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Sto11g1865 213 PANTHER CALCINEURIN B 1 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Sto11g1865 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Sto11g1865 213 PRINTS Recoverin family signature 75 96 - -
Sto11g1865 213 PRINTS Recoverin family signature 122 140 - -
Sto11g1865 213 PRINTS Recoverin family signature 168 188 - -
Sto11g1865 213 Gene3D - 17 211 - -
Sto11g1865 213 PANTHER CALCINEURIN B-LIKE PROTEIN 9 1 213 - -
Sto11g1865 213 Pfam EF-hand domain pair 107 176 IPR002048 GO:0005509
Sto11g1865 213 SMART efh_1 152 180 IPR002048 GO:0005509
Sto11g1865 213 SMART efh_1 108 136 IPR002048 GO:0005509
Sto11g1865 213 SMART efh_1 71 99 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1865 Sto-Chr11 17410953 17413854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1865 1 213 EF-hand Containing Proteins AT4G17615 84.977 6.97e-133 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1865 K06268 - vvi:100243294 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3465 6 40316868 40318928 Sto11g1865 11 17410953 17413854 CCT
Sto11g1865 11 17410953 17413854 Sto11g1865 11 17410953 17413854 ECH