Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3020 ATGGCAGCACCTATTCTCCAATCAACCCCATTTTCTTCTCCAAAACCCATCACAGACACACCGAGAAGCAGCGAACTCTACCTCCTTCCTTTACCCCACCTTCTCTCTCTCATACCCAAATGCGCTTCTCTCAGAGACCTGAAGCAAATCCAAGCATACGCCATCAAAACCCACTTGAAGGATGATGTCTCTGTCCTCACCAAGCTCATCAATTTCTGCACTTCCAACCCCACCTCTGCTTCCATGGACTATGCCCGCAAGGTGTTCGACAATATTCCCCAACCAGACATTGTCATTTTCAACTCCATGGCTCGCGGCTACGCTCGCTTTGATAACCCACTTCGAGCAATTCTGCTTTTTGCTCAACTTTTATGCTCTGGCCTCATCCCTGATGATTATACCTTCCCGTCGCTTCTCAAGGCATGTGCTAGAGTTAAAGCCTTGGAGGAAGGAAAACAAGTGCATTCTCTTGCTATCAAACTTGGGGTCAGTGATAATTTGTATGTCCGTCCAACACTTATAAATATGTATACTTCCTGTAATGACATAGATTCTGCTAGAAGGGTCTTTGATAAGATTGATGAACCATGTATTGTTACATATAATGCACTCATTACAAGCTATGCTCGAAATAGTCAACCCAATGAGGCCTTGGCTTTGTTTCGAGAATTGCAGGAGAGGGGTCTTAAGCCAACTGATGTCACCATGCTTGTTTCACTTTCATCTTGCGCTTTGTTGGGAGCATTAGACTTGGGAAAGTGGATACATGAGTATGTTAAGAAAAATGGGTTTGATCAATATGTTAAGGTAAATACTGCACTAATAGATATGTATGCTAAATGTGGGAGTCTGAGTGATGCTGTTTCTGTATTTGAGAACATGCCTGTTAGAGATACACAGGCTTGGTCAGCTATGATTGTTGCATATGCCACTCATGGACATGGTTTCAAAGCCATATCAATGTTGGAAGAAATGAAGAAAGCGAAAGTGCAGCCTGATGAAATAACATTTCTAGGTATATTGTATGCTTGCAGTCACAATGGATTGGTAGACAAAGGTTATGAGTACTTCCATAATATGATTCACAAGTATGGGATTGTTCCTAGCATAAAGCATTATGGGTGCATGGTTGATTTGCTAGGCCGAGCCGGACGCTTGGATGAGGCCTATGAATTCATAGATGAATTGCCCATTAAGCCGACTCCAATTCTGTGGCGGACATTGCTATCTGCTTGTGGAAGTCATGGGAATGTAGAATTGGGAAAGCAAGTGATACAGAGAATCTTTGAACTGGATGACACTCACGGTGGGGATTACGTGATTTTGTCGAACTTGTGTGCGAGATCTGGGAAATGGGAGGATGTGAATTTCTTGAGGAAAATGATGAAAGATAGAGGAGCAGTAAAGATTCCTGGATGTAGCTCAATAGAAGTCAACAATGTTGTCCATGAATTCTTCTCTGGGTATGGAGTTCATTCAAATTCTACTGCATTGCATCATGCACTTGATGAGCTGGTAAAAGACTTGAAGCTGGCTGGGTATGTTCCAGATACTTCTCTAGTCTTTCATGCAGACatggaagatgaagagaaagagaTTATTCTTAGATATCATAGTGAGAAATTGGCCATTGCTTTTGGGCTTCTGAATACTCCCCCAGGAACAACAATTCGTGTGGTGAAGAACCTTAGAGTCTGTGGGGATTGCCACAATGCTGCTAAATTCATATCATTGATCTTTGGCAGACAAATTGTGCTTAGGGATGTCCAGAGATTTCATCATTTTAGAGACGGGAAGTGCTCCTGTGGGGATTACTGGTAG 1821 0.4217 MAAPILQSTPFSSPKPITDTPRSSELYLLPLPHLLSLIPKCASLRDLKQIQAYAIKTHLKDDVSVLTKLINFCTSNPTSASMDYARKVFDNIPQPDIVIFNSMARGYARFDNPLRAILLFAQLLCSGLIPDDYTFPSLLKACARVKALEEGKQVHSLAIKLGVSDNLYVRPTLINMYTSCNDIDSARRVFDKIDEPCIVTYNALITSYARNSQPNEALALFRELQERGLKPTDVTMLVSLSSCALLGALDLGKWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLSDAVSVFENMPVRDTQAWSAMIVAYATHGHGFKAISMLEEMKKAKVQPDEITFLGILYACSHNGLVDKGYEYFHNMIHKYGIVPSIKHYGCMVDLLGRAGRLDEAYEFIDELPIKPTPILWRTLLSACGSHGNVELGKQVIQRIFELDDTHGGDYVILSNLCARSGKWEDVNFLRKMMKDRGAVKIPGCSSIEVNNVVHEFFSGYGVHSNSTALHHALDELVKDLKLAGYVPDTSLVFHADMEDEEKEIILRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIVLRDVQRFHHFRDGKCSCGDYW 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3020 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Sto6g3020 606 Gene3D Tetratricopeptide repeat domain 161 269 IPR011990 GO:0005515
Sto6g3020 606 TIGRFAM PPR: pentatricopeptide repeat domain 199 232 IPR002885 -
Sto6g3020 606 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Sto6g3020 606 TIGRFAM PPR: pentatricopeptide repeat domain 301 334 IPR002885 -
Sto6g3020 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Sto6g3020 606 Gene3D Tetratricopeptide repeat domain 270 521 IPR011990 GO:0005515
Sto6g3020 606 Pfam E motif 415 477 IPR046848 -
Sto6g3020 606 Pfam PPR repeat family 298 344 IPR002885 -
Sto6g3020 606 Pfam PPR repeat family 196 243 IPR002885 -
Sto6g3020 606 Pfam PPR repeat 272 295 IPR002885 -
Sto6g3020 606 Pfam PPR repeat 373 396 IPR002885 -
Sto6g3020 606 Pfam PPR repeat 98 127 IPR002885 -
Sto6g3020 606 Pfam DYW family of nucleic acid deaminases 513 606 IPR032867 GO:0008270
Sto6g3020 606 Gene3D Tetratricopeptide repeat domain 47 160 IPR011990 GO:0005515
Sto6g3020 606 PANTHER BNAA02G26650D PROTEIN 26 592 - -
Sto6g3020 606 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 592 - -
Sto6g3020 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3020 Sto-Chr6 37276304 37278124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3020 34 606 Glycoside Hydrolase AT3G49170 40.964 2.34e-151 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3020 - - gmx:100817794 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3020 6 37276304 37278124 Sto3g1557 3 11535001 11536917 CCT