Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1557 ATGTTCCTCAACCTTCGCTTTCACTCATACCCTTTCGTTCACGTTTCTCCCAATCTCCATTTCTACCtcactctttctcttcttcactCCTCTCCTCAACATCATCACACACTCCCACTGAATCCTCCAACCCCCAATCAAAACCACCCAAAACCCGTCTCTTTCCCTCCTCCTTTCTTCCCCAAACAACTTCTCATTTCCGCTTTGAAATCTGTTACCCATAAGACCCATTTGCTTCAAATTCACGCTCACATCATCCGTGCATCCCTCCTTCAGGACCCTGCAATTTCCCTCCCCTTCTTGTCCCTTATTGCCCTCCGGCCTCCCTTCCAAGATCCCATCTATTCTCGCCGTTTCTTCGCCCAGATCCCTCGCCCATCGCCTTTTCATTACAACACCATGATCAGGGCGTACTCTATGAGCAATTCCCCTGAAAGGGGTCTCTTTTTGTATCGAGATATGAGAAGACGAGGTATTCGTCCAGACCCATTATCTTCTTCCTTTGCTGTTAAGTCTTGTGTCAGGATTCTTCATCTTGTTGGTGGGGTTCAGGTTCATGGAAGCTTCTTGAAAGCTGGGCATCAATCGGATAGCCTTTTGCTCACAACTCTCATGGACTTGTACTCGCAATGTGAGAAATGGGATGATGCATGGAAGTTGTTTGATGATATGCCTCAGAGAGATACTGTTGCTTGGAATGTCATGATTTCCTGCTGCATTCGTAATAAGCGCACTCGGGATGCTTTGAGTTTGTTCGATGTCATGCAGAGTGAAAACTATAAATGTAAACCCGATGATGTTACTTGTTTACTCTTGCTTCAAGCTTGCGCCAATTTGAATGCACTGGAATTCGGGGAACGGATTCATAGTTATATTACGGAACACGGGTATGGTGGGTCTCTCCGTTTGTCTAATTCTCTCATATCTATGTATTCTCGATGTGGTTGTTTGGATAAAGCTTATGGGGTGTTTAAGGAAACGGACAATAAAAGTGTGGTTTCATGGAGTGCTATGATATCTGGGTTGGCAATGAATGGATATGGAAGAGAAGCTATAGAAGCATTTGAAGAGATGCTAAGAATGGGGATTCATCCAGAAGATCAGACATTCACAGGAGTTCTTTCAGCTTGCAGCCATTCCGGGTTGGTTCACGAGGGAATGTCATTTCTTGAGCGTATGAGCAAAGAGTTTGGAATAACTCCCAACATCCATCATTATGGATGCATGGTTGATCTCTTGGGACGTGCTGGTTTACTTGATCAAGCCTACCAGCTCATCACGTCAATGGTGGTAAAGCCTGATTCAACCATATGGAGAACCTTACTTGGGGCTTGCAGAATTCATGGCCATGTGAATCTTGGTGAAAGGGTAATTGAGCATTTGATTGAAATGAAAGCTCAAGAAGCTGGGGATTATGTTTTGCTGCTAAATATTTATTCTTCGGCTGGTCACTGGGAGAAGGTAGCAGAAgtgagaaaactaatgaaagaGGAAGCAATCCAAACCACACCTGGTTGTAGCACTATTGAATTCAAAGGAGTAGTACACGAGTTCATTGTGGACGATGTTTCACATCCAAGAAAAGGTGAGATTTATGAGAAGCTGAGTGAGATTAACCAACAGCTGAAGATTGCAGGGTATGATGCTGAGCTATCCTCTGAGTTACATAAGTTGGATGACAGAGAAAAGGGCTATGTGCTCTCTCATCACAGTGAAAAGTTGGCTATTGCTTTTGGAGTCCTTGTAACTCCACCAGGCACAACACTGAGAGTGGCCAACAATCTACGCATATGTGTTGATTGTCacaattttatgaaaattttttcTGGAGTTTACAATCGCAATGTGATTGTCAGAGATCGCAATAGGTTTCATCACTTCCGGGGAGGCCACTGCTCCTGTAATGACTATTGGTAG 1917 0.4304 MFLNLRFHSYPFVHVSPNLHFYLTLSLLHSSPQHHHTLPLNPPTPNQNHPKPVSFPPPFFPKQLLISALKSVTHKTHLLQIHAHIIRASLLQDPAISLPFLSLIALRPPFQDPIYSRRFFAQIPRPSPFHYNTMIRAYSMSNSPERGLFLYRDMRRRGIRPDPLSSSFAVKSCVRILHLVGGVQVHGSFLKAGHQSDSLLLTTLMDLYSQCEKWDDAWKLFDDMPQRDTVAWNVMISCCIRNKRTRDALSLFDVMQSENYKCKPDDVTCLLLLQACANLNALEFGERIHSYITEHGYGGSLRLSNSLISMYSRCGCLDKAYGVFKETDNKSVVSWSAMISGLAMNGYGREAIEAFEEMLRMGIHPEDQTFTGVLSACSHSGLVHEGMSFLERMSKEFGITPNIHHYGCMVDLLGRAGLLDQAYQLITSMVVKPDSTIWRTLLGACRIHGHVNLGERVIEHLIEMKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKEEAIQTTPGCSTIEFKGVVHEFIVDDVSHPRKGEIYEKLSEINQQLKIAGYDAELSSELHKLDDREKGYVLSHHSEKLAIAFGVLVTPPGTTLRVANNLRICVDCHNFMKIFSGVYNRNVIVRDRNRFHHFRGGHCSCNDYW 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1557 638 Pfam PPR repeat 405 430 IPR002885 -
Sto3g1557 638 Pfam PPR repeat 305 326 IPR002885 -
Sto3g1557 638 Pfam PPR repeat 202 227 IPR002885 -
Sto3g1557 638 Pfam PPR repeat 130 159 IPR002885 -
Sto3g1557 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Sto3g1557 638 Pfam DYW family of nucleic acid deaminases 546 638 IPR032867 GO:0008270
Sto3g1557 638 PANTHER BNAA06G20590D PROTEIN 68 624 - -
Sto3g1557 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 227 IPR002885 -
Sto3g1557 638 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 68 624 - -
Sto3g1557 638 TIGRFAM PPR: pentatricopeptide repeat domain 369 402 IPR002885 -
Sto3g1557 638 TIGRFAM PPR: pentatricopeptide repeat domain 131 162 IPR002885 -
Sto3g1557 638 TIGRFAM PPR: pentatricopeptide repeat domain 333 365 IPR002885 -
Sto3g1557 638 TIGRFAM PPR: pentatricopeptide repeat domain 230 261 IPR002885 -
Sto3g1557 638 TIGRFAM PPR: pentatricopeptide repeat domain 202 228 IPR002885 -
Sto3g1557 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Sto3g1557 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Sto3g1557 638 Pfam E+ motif 515 541 IPR046849 -
Sto3g1557 638 Pfam PPR repeat family 228 278 IPR002885 -
Sto3g1557 638 Pfam PPR repeat family 330 378 IPR002885 -
Sto3g1557 638 Pfam E motif 448 510 IPR046848 -
Sto3g1557 638 Gene3D Tetratricopeptide repeat domain 397 557 IPR011990 GO:0005515
Sto3g1557 638 Gene3D Tetratricopeptide repeat domain 283 396 IPR011990 GO:0005515
Sto3g1557 638 Gene3D Tetratricopeptide repeat domain 174 282 IPR011990 GO:0005515
Sto3g1557 638 Gene3D Tetratricopeptide repeat domain 65 173 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1557 Sto-Chr3 11535001 11536917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1557 55 638 Glycoside Hydrolase AT3G49170 34.407 2.68e-120 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1557 - - lja:Lj0g3v0169319.1 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3020 6 37276304 37278124 Sto3g1557 3 11535001 11536917 CCT
Sto3g1557 3 11535001 11536917 Sto3g1557 3 11535001 11536917 ECH