Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1154 ATGTCGTCAACGGGTGTGGCTGCTCTTAGTCCAGTTAGCCGTGAGCCATTGCTGGCTCAGAATGTTTTCCCTATTCCACCACACTTGTCCCTAGAGGAGtccatttttatatatctctcaTTTTCTGGGTCAATGACTCCCATGCGTGTTCTGGAGTGTGATACCATTGAGTCTTTGAAACTCAAAATCCAAAACTGTAATGGGTTTTTAACAAAGAAGCCAAAGTTGGTCTGTGGTGGCCGGGAACTAGCTCGAAGCAATTCTTTACTTCGGGACTATGGGGTGACAGATGGAAATGTTCTGCATTTGGTGCTCAGATTGTCAGATCTTCAGGTCATCAGTGTGCAAACTTCTTGTGGGAAGGAATTTACGTTTCATGTGGAACGAGGTAGGGATGTTGGGTATGTTAAACATCAGATTGCCAAAAGAGAGAAACGGTATTCTGATCCTGAACAGCAAGAAGTTGTATGCAATGGGGAACGGCTTGAGGACCAGAGGCTCATTGATGATATCTGTGACAAACATAATGATGCAGTGATACATCTGTTTGTTAAGAAGTCAGCAAAAGTTCGGGCGAGACCAGTTAAGAAGAATCTTGAGTTGTCCATTGTGGCAACAGAGTTGAACAATAGGAAATGTTATGACGTTGATAAAGTTGTTGAAAAAGAGGTTTTGGGAGATACTGTTCCTAGAAAACATCCTGATAAACATGTTCTTTTGGAGCCTGTTATTATTAACCCTAAGATTGAATTGGCTTCAGTGGTGTGGGATATGATAAATTCTTCCTATGATGGATTAGGAAGTGGAAACTACCCAATCAGATCTGCGGAGGGTACAGGAGGAGCTTACTTTATGCTGGATTCGTCAGGGAAAAGGTATGTGTCTGTTTTTAAGCCTATTGATGAAGAACCAATGGCTGTGAATAACCCTCGAGGTTTACCTATGTCATTGGATGGTGAAGGCTTAAAAAAGGGCACAAAAGTTGGTCAAGGAGCATTTAGAGAAGTTGCAGCTTACATTTTGGACCATCCAATAGGCGGGCGTCGTTCATTATTTGGGGACTTGACTGCTAAGATTGGCTCCTTACAAATGTTCATGGAGAATAAGGGAAGTTGTGAGGATATGGGCCCAGGGGCTTTCCCGGTCAAGGAAGTGCATAAAATCAGTGTGCTGGATATCAGATTGGCAAATGCAGATAGGCATACTGGGAATATTTTGATCGGTGCAAAAGATGAAAATGGCCAAGCTGTGTTGATTCCAATTGATCATGGATATTGCTTGCCCACAAGTtttgaagattgcACCTTTGAATGGCTTTACTGGCCTCAAGCTCGCCAGCCGTACTCCCCAGAAACCGTTGACTACATAAAGTCGCTGGATGCCGAAGAAGATATTGCCCTTCTGAAGTTTCATGGATGGGATCTCCCCATCGAATGTGCCCGCATCCTTCGAATCTCCACCATGCTTCTGAAGAAAGGAGTAGTAGAGAGAGGACTGACACCATTCCAAATTGGAAGTCTGATGTGCAGGCAATCCTTGAACAAGGAATCTGTGATCGAGGAAATTGTTCAAGCAGCAATGGATTCTGTTCTTCCTGGAACAAGCGAAGCCACACTGCTCGATGCTGTTTCCCAGATCATGGACCAGCGCCTTGATGAGAATCATGCACAAAAATAA 1677 0.4317 MSSTGVAALSPVSREPLLAQNVFPIPPHLSLEESIFIYLSFSGSMTPMRVLECDTIESLKLKIQNCNGFLTKKPKLVCGGRELARSNSLLRDYGVTDGNVLHLVLRLSDLQVISVQTSCGKEFTFHVERGRDVGYVKHQIAKREKRYSDPEQQEVVCNGERLEDQRLIDDICDKHNDAVIHLFVKKSAKVRARPVKKNLELSIVATELNNRKCYDVDKVVEKEVLGDTVPRKHPDKHVLLEPVIINPKIELASVVWDMINSSYDGLGSGNYPIRSAEGTGGAYFMLDSSGKRYVSVFKPIDEEPMAVNNPRGLPMSLDGEGLKKGTKVGQGAFREVAAYILDHPIGGRRSLFGDLTAKIGSLQMFMENKGSCEDMGPGAFPVKEVHKISVLDIRLANADRHTGNILIGAKDENGQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPETVDYIKSLDAEEDIALLKFHGWDLPIECARILRISTMLLKKGVVERGLTPFQIGSLMCRQSLNKESVIEEIVQAAMDSVLPGTSEATLLDAVSQIMDQRLDENHAQK 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1154 558 SMART ubq_7 111 185 IPR000626 GO:0005515
Sto6g1154 558 SMART ubq_7 35 106 IPR000626 GO:0005515
Sto6g1154 558 SUPERFAMILY Ubiquitin-like 108 186 IPR029071 -
Sto6g1154 558 CDD Ubl_ubiquitin_like 113 183 - -
Sto6g1154 558 SUPERFAMILY Ubiquitin-like 40 108 IPR029071 -
Sto6g1154 558 Gene3D - 112 200 - -
Sto6g1154 558 Pfam Phosphatidylinositol 3- and 4-kinase 278 504 IPR000403 -
Sto6g1154 558 Gene3D - 34 109 - -
Sto6g1154 558 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 351 IPR044571 -
Sto6g1154 558 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 353 554 IPR044571 -
Sto6g1154 558 Pfam Ubiquitin family 113 186 IPR000626 GO:0005515
Sto6g1154 558 Pfam Ubiquitin family 37 107 IPR000626 GO:0005515
Sto6g1154 558 ProSiteProfiles Ubiquitin domain profile. 113 170 IPR000626 GO:0005515
Sto6g1154 558 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 353 554 - -
Sto6g1154 558 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 351 - -
Sto6g1154 558 SUPERFAMILY Protein kinase-like (PK-like) 389 553 IPR011009 -
Sto6g1154 558 ProSiteProfiles Ubiquitin domain profile. 54 106 IPR000626 GO:0005515
Sto6g1154 558 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 269 538 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1154 Sto-Chr6 11080145 11082404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1154 29 553 Acyl Lipid Metabolism Gene Families AT5G24240 54.955 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1154 - - gmx:100791631 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1154 6 11080145 11082404 Sto5g1274 5 8657888 8665112 ECH
Sto6g1154 6 11080145 11082404 Sto6g1154 6 11080145 11082404 ECH
Sto6g3100 6 37934768 37936748 Sto6g1154 6 11080145 11082404 ECH