Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0648 ATGGAGCGAAAGAAAACAATGACCATGAGTTGGAAAGGCCTCGGagacgacgacgacgatgaGCACTTCTTCGAGAGCTTCGAACGTGCCGCCGGTGGCGTCCAGGATGGAGCGTCCTCCTCCTCCGACGAAGAATTTGAAGACAGCCGAATGTCCTTCTCCTCTCAATCTCAACGATTCTCCGCTCCATCTCATCGATTCGCCATTCCATCTCAACGATTCGCCGTTCCATCTCAACGATTCGCCGCTCCATCTAACCGATTCAGAATCCTCTCAAAAAAAGCATCGACGGCTGCTGTTGCAGTGGCGGTGCCGGACTTCGACTACAACATGTGGATGGCAGCACCTGGATCGATCACGGAACGCAGGAAGAAATTGCTTCACGGAATGGGCCTGGACGAGAACAAGGAGCTTTTGAAGATGCAGAGCATCGCGATCGAGCGCGCGATGACGAGGAAATTTGAGAGTAACAATGCCGCACCCGTGCCTGATTCTGCATCGTCAGAGTCCAAACAGAGCCTTCCTGACTCTGCCGccgctcctcctcttcctcctcgtCCTAAAGCTGCCGCTCCAGCTGCCACTCCTCCTCCGGCTCCGGATTTGGCTCCAGCTCCAGATTCGGCTGCTCCTAAAGTGGTTTCTACCGAAGCTACTGCACCTGCTGTTACTACTACTATTGATGATGATAATACTGGTGGTAGTGCAATCATTGTGTCTTCATCAGAGGAACACAAAACAGAGGTTTCACATGTTCCATTCGTTCTCGTGCGATCACGTTCCGATGGAGATGTAGATGCCGATTCATTTTCTATGCCCAAACTCAGGAAAGAGGAACTCATAGGTAAGGTCTCAAAGCAGCGTCTCACAAAAACCTACTCAGAGATCACCTTAGCTCGTCCTCGTATGTGTCCCTACACATACATAGCCACCGCAAAAGATGACATTGTTTTGGATGGTGTCGACGGGGACCAACCATCGAAGCGCCACCATCGAAAACTCACCTCAGTCGTCTCCAACACCGGCTTTGGCTCATTTTTCCTCATCAAGAACCTTGACACCGGCAAGGAGTTCATCGTCACGGGCAAGGACCACAGCGAGAACGGCACGTGGAACCATCTAAACGATGTGCAAACAGGGAAGAAGCTGACGATGGAGGAATTCGAGAAGTCAGTGGGACACTCCCCTGTGGTAAAGGAGCTTATGCGACGCGGGAGAGGTCAAACCGATAGGAAACTAAGCGCGAATCATTACATCTCCAAGAGCCTGAAGATGAGCAAGAAAACAGGGGCTGCGTTGTTCAAGAGCATGAAGGGTGTGGCGAGTGGGTATTTTGGGGAAAGAGAAAGATCAGAGAAAGGAGAGAAGGATGGAGAATCGCCACCTGCTGCTAATTTGCCTTCTTCAGCGCCATCACAACCTGCGAAATCAGATGAGAGTAAATCACAACAGAGTAAGAATGAATGGGTGAAAGTAAGGCAAAGTGGGAAGTCTCAGAAGGAGCTTTCTGCGTTGCATTTGTGTCAGGAATTTCAGGCGCATGAGGGGTGTATTTGGACGATAAGGTTTAGTTGGGATGGTCATTATTTGGCGAGTGCAGGGGAGGACAAGGTGATTCATGTGTGGGAAGTGCAAGAATGTGAACTCACGTCGTTATCGCCGGAGGAAGGGAATTTGACTCCCCTTCATCCAGCACTTCTGGGATCATCCGCCGCTCCGGCGGCAGAGCAGGATGACGCGGCAGCGAAAAAGAAGGGAAAGGCTGGGAATAAGAAAGATGAAAAGGTTCCGGATTATGTTCATGTGCCAGAAACCGTGTTCTCCCTTTCTGATAAACCATTTTGCACTTTAAAAGGACATTCTGATGATATTTTGGATTTATCTTGGTCTAAATGTCAGCTACTTCTTTCGTCTTCAACGGATAAAACAGTGAGACTATGGGACTTGGAAGAAAAGATGTGCTTGAAGGTGTTTACCCATAATGACTTTGTAACATGCATACAGTTCAATCCTATAGACGACGATTACTTCATTAGTGGCTCACTTGATGCTAAGGTTAGAATATGGAGCATCCCTCAAAGACATGTCGTGGATTGGACTGATGTCCATGAAATGGTCACTGCCATCTCTTACACTCCTGACGGTCAGGCTGCTCTTATTGGAACACACAACGGTAATTGTATGATGTATGGTGCAGAAGAGGGCAAATTAACTCAAACAAGCGTAATTGATTTACAACCCAGAAAGAAAGCTCCACTAAGAAAAGTCACTGGTTTTCAGTTTGCACCAAGTAATCCATCAGAAGTACTAGTCACAACAGCAGATTGCAGGATTAAAATTGTAGAAAGCACAAAAGTCGTTCATAAGTTCCAAGGTTTTCGAAATGCAAACAGTCAAATAGCAGCTTCATTTAGCCCACACGGAAGGCACGTGATCAGTGCAAGCGAAGATTCTCAGGTATATTTTTGGAGGTACGATGAACCTCGACAAGGAAGCAATAACCAAGCAAAAGCCAGACCATTGGTAGTGACTAAAGGCTTCGAGAGTTTCCCATGTAAGGATGTTGCAGTTGCAGTACCATGGCCTTTCACCATAAAGGGAGATCCCCCACAACCCGGTTCTCGTAACTCCAAGAATACTACTACTAACCCTTCAAACTCAAAACGCTCTGATTCCATAGCCAAATCCGACGCTGACCCCGCAAACAACAGCAAGAAATCATCAAGTGCTCTCCCACCTCTCCCCAACAAGAAGGAAGACCCTCCACCCACCGCCACCGACGAATCTAACAATAAAGATAACGATGAAAATAACAATAATGGCGCAGATCAAAGCGAAACGAACGGTCCAAATTCTTCATCAGGGCAAACAGAGGAGACCGCTGAGTCAACAGCTGATCCTTCAGCGATATCAAAAGAATCAGAAGTAGGGGACTCATCTGCGTCGTTAGATCCTTCATCAATAAAGAATGAGGAAGGTTCATCCAATACGACATCGTCGAAGTCAGGGTTAGAGAATAAGCAGGGTGGGGGTTCAGGGCATCCGGGAGCGTGGGGATTGGTGATAGCGACGGCAAGCTTAGGAGGAGAAATAAGGTGCTATCAGAATTTTGGGTTGCCTAGAAAGGTAGGTGGTAGCCTTTTTTga 3147 0.4706 MERKKTMTMSWKGLGDDDDDEHFFESFERAAGGVQDGASSSSDEEFEDSRMSFSSQSQRFSAPSHRFAIPSQRFAVPSQRFAAPSNRFRILSKKASTAAVAVAVPDFDYNMWMAAPGSITERRKKLLHGMGLDENKELLKMQSIAIERAMTRKFESNNAAPVPDSASSESKQSLPDSAAAPPLPPRPKAAAPAATPPPAPDLAPAPDSAAPKVVSTEATAPAVTTTIDDDNTGGSAIIVSSSEEHKTEVSHVPFVLVRSRSDGDVDADSFSMPKLRKEELIGKVSKQRLTKTYSEITLARPRMCPYTYIATAKDDIVLDGVDGDQPSKRHHRKLTSVVSNTGFGSFFLIKNLDTGKEFIVTGKDHSENGTWNHLNDVQTGKKLTMEEFEKSVGHSPVVKELMRRGRGQTDRKLSANHYISKSLKMSKKTGAALFKSMKGVASGYFGERERSEKGEKDGESPPAANLPSSAPSQPAKSDESKSQQSKNEWVKVRQSGKSQKELSALHLCQEFQAHEGCIWTIRFSWDGHYLASAGEDKVIHVWEVQECELTSLSPEEGNLTPLHPALLGSSAAPAAEQDDAAAKKKGKAGNKKDEKVPDYVHVPETVFSLSDKPFCTLKGHSDDILDLSWSKCQLLLSSSTDKTVRLWDLEEKMCLKVFTHNDFVTCIQFNPIDDDYFISGSLDAKVRIWSIPQRHVVDWTDVHEMVTAISYTPDGQAALIGTHNGNCMMYGAEEGKLTQTSVIDLQPRKKAPLRKVTGFQFAPSNPSEVLVTTADCRIKIVESTKVVHKFQGFRNANSQIAASFSPHGRHVISASEDSQVYFWRYDEPRQGSNNQAKARPLVVTKGFESFPCKDVAVAVPWPFTIKGDPPQPGSRNSKNTTTNPSNSKRSDSIAKSDADPANNSKKSSSALPPLPNKKEDPPPTATDESNNKDNDENNNNGADQSETNGPNSSSGQTEETAESTADPSAISKESEVGDSSASLDPSSIKNEEGSSNTTSSKSGLENKQGGGSGHPGAWGLVIATASLGGEIRCYQNFGLPRKVGGSLF 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0648 1048 MobiDBLite consensus disorder prediction 158 175 - -
Sto6g0648 1048 PANTHER WD REPEAT DOMAIN 44 6 1045 IPR040324 -
Sto6g0648 1048 MobiDBLite consensus disorder prediction 218 242 - -
Sto6g0648 1048 Pfam WD domain, G-beta repeat 509 542 IPR001680 GO:0005515
Sto6g0648 1048 Pfam WD domain, G-beta repeat 654 690 IPR001680 GO:0005515
Sto6g0648 1048 Pfam WD domain, G-beta repeat 787 823 IPR001680 GO:0005515
Sto6g0648 1048 Pfam WD domain, G-beta repeat 613 648 IPR001680 GO:0005515
Sto6g0648 1048 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 617 650 - -
Sto6g0648 1048 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 511 545 - -
Sto6g0648 1048 Gene3D - 494 845 IPR015943 GO:0005515
Sto6g0648 1048 ProSiteProfiles Trp-Asp (WD) repeats profile. 617 657 IPR001680 GO:0005515
Sto6g0648 1048 ProSitePatterns Trp-Asp (WD) repeats signature. 635 649 IPR019775 -
Sto6g0648 1048 ProSitePatterns Trp-Asp (WD) repeats signature. 530 544 IPR019775 -
Sto6g0648 1048 SUPERFAMILY WD40 repeat-like 505 828 IPR036322 GO:0005515
Sto6g0648 1048 ProSiteProfiles Trp-Asp (WD) repeats profile. 657 691 IPR001680 GO:0005515
Sto6g0648 1048 MobiDBLite consensus disorder prediction 578 594 - -
Sto6g0648 1048 MobiDBLite consensus disorder prediction 935 1007 - -
Sto6g0648 1048 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 657 691 - -
Sto6g0648 1048 MobiDBLite consensus disorder prediction 446 494 - -
Sto6g0648 1048 ProSiteProfiles Trp-Asp (WD) repeats profile. 511 552 IPR001680 GO:0005515
Sto6g0648 1048 MobiDBLite consensus disorder prediction 178 205 - -
Sto6g0648 1048 MobiDBLite consensus disorder prediction 571 594 - -
Sto6g0648 1048 MobiDBLite consensus disorder prediction 156 242 - -
Sto6g0648 1048 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 1045 - -
Sto6g0648 1048 SMART WD40_4 651 690 IPR001680 GO:0005515
Sto6g0648 1048 SMART WD40_4 610 648 IPR001680 GO:0005515
Sto6g0648 1048 SMART WD40_4 783 824 IPR001680 GO:0005515
Sto6g0648 1048 SMART WD40_4 504 543 IPR001680 GO:0005515
Sto6g0648 1048 SMART WD40_4 746 782 IPR001680 GO:0005515
Sto6g0648 1048 SMART WD40_4 692 731 IPR001680 GO:0005515
Sto6g0648 1048 MobiDBLite consensus disorder prediction 870 911 - -
Sto6g0648 1048 MobiDBLite consensus disorder prediction 465 480 - -
Sto6g0648 1048 MobiDBLite consensus disorder prediction 866 1018 - -
Sto6g0648 1048 PRINTS G protein beta WD-40 repeat signature 530 544 IPR020472 -
Sto6g0648 1048 PRINTS G protein beta WD-40 repeat signature 635 649 IPR020472 -
Sto6g0648 1048 PRINTS G protein beta WD-40 repeat signature 677 691 IPR020472 -
Sto6g0648 1048 ProSiteProfiles Trp-Asp (WD) repeats profile. 803 833 IPR001680 GO:0005515
Sto6g0648 1048 MobiDBLite consensus disorder prediction 25 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0648 Sto-Chr6 6860232 6864479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0648 614 823 Miscellaneous Gene Families AT5G08390 24.771 2.21e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0648 K20241 - gmx:100779364 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0648 6 6860232 6864479 Sto1g2410 1 31818038 31821537 CCT
Sto6g0648 6 6860232 6864479 Sto6g0648 6 6860232 6864479 ECH