Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0874 ATGGATTCCAACAAGGTCCGTGCCACCATCTTGGTGTTGTCTCTGCTTGCTTACTCCACATTCTTCACCCACGTGGACGCTTGCGGCGGCTCTCCGTCTCCGAAGCCGACTCCTCCGACACCGGCGACCGAGAAATGCCCGAAGGACACGTTGAAGCTGTCTCTGTGTGCGGACGTGTTGGGGCTGGTGAACATTGTGGTGGGGACTCCTCTTCACACCAAGTGCTGTGCGTTGATTCAAGGTTTGGCGGATTTGGAGGCGGCGCTTTGTCTTTGCACTGCTATTAAGGCTAATGTGCTTGGGATCAACTTGAATGTTCCCGTTGCATTGAGCCTCATTCTTAGTGCTTGTGAGAAAACTGTTCCTCCTGGTTTCCAATGTCCATAG 387 0.5323 MDSNKVRATILVLSLLAYSTFFTHVDACGGSPSPKPTPPTPATEKCPKDTLKLSLCADVLGLVNIVVGTPLHTKCCALIQGLADLEAALCLCTAIKANVLGINLNVPVALSLILSACEKTVPPGFQCP 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0874 128 CDD HPS_like 45 127 IPR027923 -
Sto5g0874 128 Gene3D - 43 128 IPR036312 -
Sto5g0874 128 Pfam Hydrophobic seed protein 46 128 IPR027923 -
Sto5g0874 128 PANTHER LIPID TRANSFER PROTEIN 30 128 - -
Sto5g0874 128 PANTHER LIPID TRANSFER PROTEIN 1 26 - -
Sto5g0874 128 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 49 128 IPR036312 -
Sto5g0874 128 SMART aai_6 46 127 IPR016140 -
Sto5g0874 128 PANTHER - 30 128 - -
Sto5g0874 128 PANTHER - 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0874 Sto-Chr5 5833435 5833821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0874 39 128 Acyl Lipid Metabolism Gene Families AT4G22490 36.957 1.14e-16 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0874 - - gmx:547594 182.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0874 5 5833435 5833821 Sto9g3318 9 33157376 33159775 CCT
Sto5g0874 5 5833435 5833821 Sto5g0874 5 5833435 5833821 ECH