Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0488 CTGGGTTGTGGATTTGTGGGGAGGATTTTCCTCCTCAGAAGCTATAGGCTCAGAAAATCATCTGTCCATTCATTACCCATGAAGCCTACCAACAACAATGTacaaacccaaacccataacACCAAAAAGCTTCCAAATCATGAATCCAAGGCCACCGACTCCCACAAAACGAATTCCGATCAGAAACCGGCCGGAAAGAGCAATTCCGGTCACCGGAGACCTTCAGATGCTGCCAGAACCTCAACATCATCATCCTCTGGTAATTCAACCGATCCAAAGAATGATGTTGAAAAGGAAAACTCTCTGGTTTTAGCCAGGATAAGTACTAGTCAGAGTCATCAGctagagaaggagaagaaaggcATAGTGAACCTCAAATTCACAGGGAATTTGCTTGGAAACAACACCCCAAGAAGAAGGGAGGGGAAAAAAGAGTTGAACTCTATGACCAACTCTTACAATAACGCAGTGATGGGAAACATCATGAGGAAGAACAGTGATGAGTTGGCGCAATTCAGGAGTCCGAGGAAGAGAGTGGAGCCTGAGTTGTTGAAGACCATGGGAAACGAAGCATACAAGCAAGGGAAATTCCAAGAGGCTTTGGGTTTGTATAACCAAGCCATTCAAATTGATGCAAACAAGGCAACCTACCATTGCAATAAGAGTGCAGCTTTAATGGCCTTAGGTCGCCTTCTAGAAGCATTGGTTGAATGCCAGGAAGCTATCCGTCTAGAACCTTCTTATGACAGAGCTCACCACCGTTTGGCAACAATCTATCTCAGACTGGGAGAAGCAGAAAAGGCCATGACTTGCAATAACACAACCCCATATGGGGATTCTGAACTGGCTTTCCAAGCTCAGGCCCTTCAGAATCACCTTCACAAATGCATTGAAGCTCGGAGACTGAATGAATGGAACACTATATTAAAGGAAACACAGTCTGCCATATCATTAGGTGCTGATTCAGCTCCTCAGGTGTATGCTCTCCGAACAGAAGCCTTACTGAAGCTCCTGAAACACCAGGAGGCATATTCTACCTATGACAAAATGCCCAAATTTGAACTTGATTGGTGCACTGAACTTTTTGGCCTACCTCGTACAGCTTACTTCTTGATGATAGGAGCTCAGGTTGATTTGGCAGCCGGAAGGTTTGAGGATGCTGTAATAGCTGCCCAGCAAGCAGCTGAACTTGATCCAATCAACAAAGAGGTGAGTGGCGTATTAAGAAGGATTAGATCAGTTGGATCAGCGAGAATGAGTGGGAATTTACTGTTCAAGGCATCAAAATTCAAGGAAGCATGTGGGGTGTACAACGAAGGACTAGAGCATGATCCATTCAACTCAGTTCTGCTATGCAACAGAGCAGCATGTCGTTCTAAGTTAGGCCAATTCGAGAAAGCAATTGAGGATTGTAACTCAGCCCTTACAGTTCAACCTTCTTACAGCAAGGCAAGGTTGAGGAGAGCAGATTGCAATGCTAAGCTGGAAAGATGGGAAGCTGCCATTGAAGACTATGAAATGCTGATAAGAGAGAAGCCAGGAGATGAGGAGGTGGGAAGGGCTCTGTTTGAGGCCCAACTTCAACTCAAGATGCTGCGTGGGGAAGATATTAAAGACTTCAAGTTTGGTTCCAATTTGGTTTCCATCTCAAGCAATGATCGGTTTAGGCATTATGTGACATCACCTGGGATGTCTGTGGTTCTGTTTTGCAACAAGGCAACCCACAAGCAAGTGTTGGTGGTGTTGGAGCAAACCTGCAAGAGATTCCCATCTGTTCATTTCCTCAAGGTGGAGATTGAAGACCACCCCTACTTAGCCAAATCAGAAAGCGTGAGCTCTATCCCAGCATTTAGAATATACAAGAACGGATCAAGGGTCGAAGAGATTCCAGGCAACAAACATGACTTGTTAGAAAGATCAGTTCAATTGTATACAAACTGA 1941 0.4389 LGCGFVGRIFLLRSYRLRKSSVHSLPMKPTNNNVQTQTHNTKKLPNHESKATDSHKTNSDQKPAGKSNSGHRRPSDAARTSTSSSSGNSTDPKNDVEKENSLVLARISTSQSHQLEKEKKGIVNLKFTGNLLGNNTPRRREGKKELNSMTNSYNNAVMGNIMRKNSDELAQFRSPRKRVEPELLKTMGNEAYKQGKFQEALGLYNQAIQIDANKATYHCNKSAALMALGRLLEALVECQEAIRLEPSYDRAHHRLATIYLRLGEAEKAMTCNNTTPYGDSELAFQAQALQNHLHKCIEARRLNEWNTILKETQSAISLGADSAPQVYALRTEALLKLLKHQEAYSTYDKMPKFELDWCTELFGLPRTAYFLMIGAQVDLAAGRFEDAVIAAQQAAELDPINKEVSGVLRRIRSVGSARMSGNLLFKASKFKEACGVYNEGLEHDPFNSVLLCNRAACRSKLGQFEKAIEDCNSALTVQPSYSKARLRRADCNAKLERWEAAIEDYEMLIREKPGDEEVGRALFEAQLQLKMLRGEDIKDFKFGSNLVSISSNDRFRHYVTSPGMSVVLFCNKATHKQVLVVLEQTCKRFPSVHFLKVEIEDHPYLAKSESVSSIPAFRIYKNGSRVEEIPGNKHDLLERSVQLYTN 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0488 646 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 644 - -
Sto5g0488 646 MobiDBLite consensus disorder prediction 74 91 - -
Sto5g0488 646 CDD TRX_family 555 631 - -
Sto5g0488 646 Coils Coil 488 508 - -
Sto5g0488 646 MobiDBLite consensus disorder prediction 43 73 - -
Sto5g0488 646 Pfam Tetratricopeptide repeat 450 481 IPR001440 GO:0005515
Sto5g0488 646 SMART tpr_5 414 447 IPR019734 GO:0005515
Sto5g0488 646 SMART tpr_5 448 481 IPR019734 GO:0005515
Sto5g0488 646 SMART tpr_5 181 214 IPR019734 GO:0005515
Sto5g0488 646 SMART tpr_5 215 248 IPR019734 GO:0005515
Sto5g0488 646 SMART tpr_5 482 515 IPR019734 GO:0005515
Sto5g0488 646 SMART tpr_5 368 401 IPR019734 GO:0005515
Sto5g0488 646 Gene3D Tetratricopeptide repeat domain 180 533 IPR011990 GO:0005515
Sto5g0488 646 SUPERFAMILY TPR-like 181 399 IPR011990 GO:0005515
Sto5g0488 646 SUPERFAMILY TPR-like 419 530 IPR011990 GO:0005515
Sto5g0488 646 MobiDBLite consensus disorder prediction 23 98 - -
Sto5g0488 646 Pfam Thioredoxin 576 637 IPR013766 -
Sto5g0488 646 ProSiteProfiles TPR repeat profile. 181 214 IPR019734 GO:0005515
Sto5g0488 646 Pfam TPR repeat 188 229 - -
Sto5g0488 646 MobiDBLite consensus disorder prediction 24 42 - -
Sto5g0488 646 SUPERFAMILY Thioredoxin-like 547 632 IPR036249 -
Sto5g0488 646 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 644 IPR044534 -
Sto5g0488 646 Gene3D Glutaredoxin 540 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0488 Sto-Chr5 3104526 3106988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0488 226 517 Glycosyltransferase AT3G04240 22.293 7.36e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0488 K09527 - gmx:100814381 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0488 5 3104526 3106988 Sto9g3015 9 31128503 31131098 CCT
Sto5g0488 5 3104526 3106988 Sto5g0488 5 3104526 3106988 ECH