Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2808 ATGTCTCCTCGTTTTGGCTTCACCTTTCTCCTCTTCCTCTCACTCCTAATCCTCTGCGGTCAGGTCCACGCTCGCTTCTTCGTCCGCCGTTTGTCGTCTTCTGATGATCTCGTTTCCGATGGCGTCCATGATTTTGGGGATTCGCAGACTCGGCCCTTAGGGTTTCTGGCGGAGTCTTCCTGCGAGCAGACGTACGGATTCTTACCCTGCACCTCCACCGTCGTCGGAAACTTGTTCCTCATCCTCGTCTATGGCTTCCTCATGTACAAGGCGGCTACCTATTTGTCCAACGGAAGCGAGCTCTTGCTTGAGATCTTGGGCCCTGGGATTGTTGGTGGCTTGTTTCTTCCTATCCTCGGCGCCCTCCCCGACGCGATGCTCATTCTAGTTTCTGGGCTTTCTGGTACTACAGAAACTGCTCAAAGTCAGGTCTCCGTTGGAATGGGTTTGCTAGCTGGGTCAACAGTGTTGCTTCTTACAATAATATGGGGAACTTGTGTAATTGTTGGCAAGTGCGACATTGAGGGTTCAATTGCAATAGATTCACAAGACACACGTGGATTTAGCTTGACTGGTTCTGGTGTTAGTACTGATATTTGGACAAGTTATGCTGCAAGGATTATGGTCATATCTGTCGTTCCATTTCTAATTGTTCAAATACCACAAATACTCAAATCAACATCAGGAAGGCACTTGGCTGTTTTGATTTCTCTTATCGTGTCTATTTGTTTATTGATTACTTATTGCCTTTACCAGGTTTTTCAGCCCTGGATACAAAGGAGAAAACTTGCTTATGTGAAACACAAGCATGTAATTTTGGGACTTTTGAGACATTTAAAGCAGCGCTCATTGGGAAGGCTGCTGGGAGAAGATGGTGAACCTGACAAAGAAACTATTAGAAAACtgttttcaaaaattgacgaGAATGGTGATGGACAACTTTCTCATGGTGAATTGAGAGCGCTAGTGGTTGGAATTCAATTTGAAGAGATTGACCTGGATCATGATGATGCTGTGAAGAAAATAATGGAGGATTTCGATACCTCTCGTGATTCACTAATTGATGAAGATGAATTTGTGAATGGAATCTGTAGATGGCTTCAGAAGGCCAGGCGCTCTCGAGTTACTTCTGGTGATGCTGGTCCACATacattcaagtttttgaatgaTTTCCACCAAGAAACAAAGAGGGAACATGATCTATTGGATGTGGGGGATGAGAGTGATGAGGTTGTTGAAGGGATTGAGAATGCCAAACAGACTACCATCAAAGCAGTATTGCTGCTGCTGCTTGGAACCATTATTGCAGCTGCATTTGCTGATCCTCTGGTTGATGCAGTTGATAACTTCTCGGATGCCACTAGTATTCCCGCCTTCTTCATTTCCTTCATTGCACTGCCTTTGGCCACAAATTCAAGTGAAGCCGTGTCAGCAATCATTTTTGCTAGTCGTGACAAGAGAAAAACTGCCTCTCTAACTTTTTCTGAGCTATATGGGGCAGTGACGATGAACAATGTGCTATGCCTGTCAGTATTCTTGGCGCTTGTTTATATAAGAGGATTGACATGGGACTTCTCCTCAGAAGTGTTGGTTATTCTTGTGGTTTGCGTTGTGATGGGTGTGTTTGCCAGTTTCCGTACAACATTCCCTCTATGGACTTCTATTCTGGCTATCCTTCTTTATCCCTTCTCTCTAGCATTGGTCTATGTTCTTGATTATGTATTCGGTTGGTCATAG 1737 0.4381 MSPRFGFTFLLFLSLLILCGQVHARFFVRRLSSSDDLVSDGVHDFGDSQTRPLGFLAESSCEQTYGFLPCTSTVVGNLFLILVYGFLMYKAATYLSNGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGTTETAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEGSIAIDSQDTRGFSLTGSGVSTDIWTSYAARIMVISVVPFLIVQIPQILKSTSGRHLAVLISLIVSICLLITYCLYQVFQPWIQRRKLAYVKHKHVILGLLRHLKQRSLGRLLGEDGEPDKETIRKLFSKIDENGDGQLSHGELRALVVGIQFEEIDLDHDDAVKKIMEDFDTSRDSLIDEDEFVNGICRWLQKARRSRVTSGDAGPHTFKFLNDFHQETKREHDLLDVGDESDEVVEGIENAKQTTIKAVLLLLLGTIIAAAFADPLVDAVDNFSDATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRKTASLTFSELYGAVTMNNVLCLSVFLALVYIRGLTWDFSSEVLVILVVCVVMGVFASFRTTFPLWTSILAILLYPFSLALVYVLDYVFGWS 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2808 578 Gene3D - 107 275 IPR044880 -
Sto4g2808 578 Gene3D - 414 571 IPR044880 -
Sto4g2808 578 ProSitePatterns EF-hand calcium-binding domain. 307 319 IPR018247 -
Sto4g2808 578 Pfam Sodium/calcium exchanger protein 79 255 IPR004837 GO:0016021|GO:0055085
Sto4g2808 578 Pfam Sodium/calcium exchanger protein 425 569 IPR004837 GO:0016021|GO:0055085
Sto4g2808 578 PANTHER - 7 576 - -
Sto4g2808 578 SMART efh_1 298 326 IPR002048 GO:0005509
Sto4g2808 578 SMART efh_1 338 366 IPR002048 GO:0005509
Sto4g2808 578 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 7 576 IPR004713 GO:0006812|GO:0008324|GO:0016021
Sto4g2808 578 Pfam EF-hand domain pair 297 361 IPR002048 GO:0005509
Sto4g2808 578 SUPERFAMILY EF-hand 293 367 IPR011992 -
Sto4g2808 578 ProSiteProfiles EF-hand calcium-binding domain profile. 334 369 IPR002048 GO:0005509
Sto4g2808 578 ProSiteProfiles EF-hand calcium-binding domain profile. 294 329 IPR002048 GO:0005509
Sto4g2808 578 Gene3D - 278 399 - -
Sto4g2808 578 CDD EFh 299 363 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2808 Sto-Chr4 28925377 28930423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2808 23 578 EF-hand Containing Proteins AT1G53210 67.487 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2808 - - gmx:100809896 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0205 7 1492508 1493506 Sto4g2808 4 28925377 28930423 ECH
Sto4g2808 4 28925377 28930423 Sto4g2808 4 28925377 28930423 ECH