Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3178 ATGAAACTGAAAGATGAAGGAAAAATTGATAAAGACGTTCCTATATCAGATGGTGCATGGTCCTGTagcttaagatataatatgagaGCAATTATGGGTAATTCACCACATTCTGTTGAAGCTAGACATCGTTCTTCTGCTTCCATGTGGATATGGGGCGGTTCGGATCCTCGGTACGTATCGAATCTGGACATAAACTGGAATGATGTAATAAAAATTGGTGAGAATCTTAGAGGGAAAGATGAAGAACTTCAAGGGATTGGCCTTATAAACTTCAATAATACAGAAATAGAGCATTGGGAGAAGGTGATTTTTCCTGATGCCACACATGTAATTTTGCATCTTGAGTATGCTGCAAGAAATGTGACATGGGAGTCTCTCTACCCAGAATGGattgatgaggaagaagaaactGAAGTCCCAATTTGCCCTTCTCTACCTAGTCTCCGACCTCCCGGAATACGGCTCAATCTCATCGCAGTGAAGCTCCCGTGTCGATCCGGCGCGAGGGATACGAATTGGTCTAGGGATGTCGCCCGGCTGCACCTACAGCTTGCAGCAGCAGGACTTGCAGCCTCTTTTAAAGGCAATTATCCTGTGAATGTGCTCTTCATTACCAATTGCTTTCCAATACCTAATCTTTTTACTTGTAAAGAACTTGTTGCACATGAAGGGAATGTGTGGTTATATAAACCAAACCTTAGTGTTTTGAGACAGAAAGTTCAGCTTCCAGTAGGATCTTGTGAACTTGCACTTCCTATGAGGGGTAAAGAGTTAGTTTACGCGGGAAATGTTCATAGAGAAGCCTATGCAACAATTCTTCATTCAGCTCATGTTTACGTGTGTGGAGCCATAGCTGCAGCGCAAAGCATCCGAATGTCCGGATCGACCCGAGACCTTGTAATACTTGTAGATGAGACAATCAGTGGATACCACAGAAGTGGCTTGGAAGCAGCAGGGTGGAAAGTGAGGACAATCCAAAGGATCAGAAACCCTAAAGCTGAAAAAGATGCATACAATGAATGGAACTACAGCAAATTCAGATTATGGCAGCTCACAGATTATGACAAGATCATATTCATTGATGCAGATTTGCTTATACTAAAAAACATAGATTTCCTATTTGGAATGCCAGAAATCACAGCCACGGGCAACAATGCCACACTCTTCAACTCAGGTGTTATGGTGGTCGAGCCATCGAACTGCACATTCGAGCTTCTGATGGATCACATCAATGAGATCGAATCATACAACGGAGGAGACCAAGGATACCTGAATGAGATCTTCACATGGTGGCACAGGATTCCAAGACACATGAACTTCTTGAAGCATTTCTGGGTTGgtgatgaagaagagaagaagcaaATGAAGACTAGGCTCTTCGGGGCCGACCCGCCAATCCTCTATGTCCTCCACTATCTGGGTTTGAAGCCATGGTTGTGCTTTAGGGACTATGATTGTAATTGGAATTCTGATATATTCCATGAGTTTGCAAGTGATGTTGCTCATGAGAGATGGTGGAGAGTGCATGATGCCATGCCTGAGCTATTGCAGCAATTTTGCTTGCTCAAGTCAAAGCAGAAGGCACAACTAGAGTGGGATAGAAGGCAAGCTGAGATAGGAAATTACACAGATGGACATTGGaggattagggttaaggattggaGGTTGAACAAGTGTATTGATAATTTGTGTTCTTGGAAGAATATGTTGAAGCATTGGGGAGAGACAAATTGGACAAATGATGAGGCTTATTATACTCCATCACCACCTGCAattgctactactactactactacagcATCACTTTCTGGGTTATGA 1821 0.4069 MKLKDEGKIDKDVPISDGAWSCSLRYNMRAIMGNSPHSVEARHRSSASMWIWGGSDPRYVSNLDINWNDVIKIGENLRGKDEELQGIGLINFNNTEIEHWEKVIFPDATHVILHLEYAARNVTWESLYPEWIDEEEETEVPICPSLPSLRPPGIRLNLIAVKLPCRSGARDTNWSRDVARLHLQLAAAGLAASFKGNYPVNVLFITNCFPIPNLFTCKELVAHEGNVWLYKPNLSVLRQKVQLPVGSCELALPMRGKELVYAGNVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISGYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILKNIDFLFGMPEITATGNNATLFNSGVMVVEPSNCTFELLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWVGDEEEKKQMKTRLFGADPPILYVLHYLGLKPWLCFRDYDCNWNSDIFHEFASDVAHERWWRVHDAMPELLQQFCLLKSKQKAQLEWDRRQAEIGNYTDGHWRIRVKDWRLNKCIDNLCSWKNMLKHWGETNWTNDEAYYTPSPPAIATTTTTTASLSGL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3178 606 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 265 515 IPR029044 -
Sto3g3178 606 CDD GT8_Glycogenin 268 513 - -
Sto3g3178 606 Pfam Glycosyl transferase family 8 274 480 IPR002495 GO:0016757
Sto3g3178 606 SUPERFAMILY Nucleotide-diphospho-sugar transferases 268 513 IPR029044 -
Sto3g3178 606 PANTHER GLYCOGENIN SUBFAMILY MEMBER 43 578 - -
Sto3g3178 606 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 1 43 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3178 Sto-Chr3 36637029 36642174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3178 55 605 Glycosyltransferase AT3G18660 70.683 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3178 K20890 - gmx:100780439 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3178 3 36637029 36642174 Sto3g3178 3 36637029 36642174 ECH
Sto3g3178 3 36637029 36642174 Sto4g0306 4 2370150 2374314 ECH