Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1681 ATGAAAGTGCTTCCCGTCAATCAGCTCAATCAATTACGTGACATTTTTGCTCGCTTTGACATGGACTCCGACGGAAGCCTAACCATCCTCGAGCTCGCCGCGCTTCTCCGATCGCTCGGCCTAAAGCCCTCGGGCGATCAAATCCACGTTCTCCTGGCCGCCATGGACTCCAACGGAAACGGATCCGTCGAATTTGACGAATTGGTAAAGGTGATTTTGCCGGACATGAACGAGGAGATATTGTTTAATCAAGAGCAGCTTCTAGAGGTTTTCAAGTGCTTCGACCGTGATGGTAACGGTTATATCACGGCGGCGGAATTGGCCGGCGCGATGGCCAAAATGGGCCAACCGCTCACATATCGAGAGCTTACGGAGATGATCAAAGAGGCCGACACCGACGGTGATGGCGTAATTAGCTTTAACGAGTTTGCCACTGTGATGGCTAGATCGGCCACCGATTCCTTCGGTGTTGCATTGTTAACCAAAGGTTGA 492 0.5142 MKVLPVNQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLAAMDSNGNGSVEFDELVKVILPDMNEEILFNQEQLLEVFKCFDRDGNGYITAAELAGAMAKMGQPLTYRELTEMIKEADTDGDGVISFNEFATVMARSATDSFGVALLTKG 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1681 163 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Sto3g1681 163 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Sto3g1681 163 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Sto3g1681 163 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Sto3g1681 163 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Sto3g1681 163 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Sto3g1681 163 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Sto3g1681 163 PANTHER CALCIUM BINDING PROTEIN 4 158 - -
Sto3g1681 163 SMART efh_1 122 150 IPR002048 GO:0005509
Sto3g1681 163 SMART efh_1 11 39 IPR002048 GO:0005509
Sto3g1681 163 SMART efh_1 86 114 IPR002048 GO:0005509
Sto3g1681 163 SMART efh_1 47 75 IPR002048 GO:0005509
Sto3g1681 163 CDD EFh 86 148 IPR002048 GO:0005509
Sto3g1681 163 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Sto3g1681 163 Gene3D - 1 102 - -
Sto3g1681 163 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Sto3g1681 163 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 4 158 - -
Sto3g1681 163 SUPERFAMILY EF-hand 4 149 IPR011992 -
Sto3g1681 163 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Sto3g1681 163 Gene3D - 103 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1681 Sto-Chr3 12867234 12867725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1681 7 159 EF-hand Containing Proteins AT1G18530 81.046 4.97e-91 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1681 K13448 - zju:107418957 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1681 3 12867234 12867725 Sto12g1018 12 6327837 6329680 ECH
Sto3g1681 3 12867234 12867725 Sto3g1681 3 12867234 12867725 ECH