Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1018 ATGGCAGCTTCATCATCGTCATCGTCTTCAATTCTGCAGCCAGAGCAACAGCAAGCAGGCTTAGGAGAGACTCCTGCTCTGCCCACGACTACCACACCAGAAGCTGTACCAACTGCTAGTGCATGGAAATCCTCTGGCTCTATTGGTCCTTTCTTTGCTGTCATCTCTGTGCTCACCATTCTGGCTTTTCTTTCTTGCTATTTGAGTCGCATCTGGAAACGAAGAAGGCCTCTCACTCCATTGGAGTGCATTGAGAACCAGGGCTGCTTTGGCTCCCTCAACCTCATGTGTAGGCGCTGCTGTACACATGTTTCTGTTGGGAATAATAAGACCAACCCCATTCATAATAATGATCAGGCCAATAAGGTTACAGATGAGATTGTTCAAATTAACCAATTAAGGGAGATTTTCTCTCGCTTCGACATGGACTCCGACGGAAGCCTAACCATCCTAGAGCTAGCCGCCCTGCTCCGATCGCTTGGCCTCAACCCTACCGGTGACCAAATCCACGCGCTTCTCGCCAATGTTGACTCTAACCGCAATGGCTCCGTGGAGTTCGATGAATTGGTGAAGGCCATATTGCCAGAGACGAACCAAGAGATGGTGATGAATCAAGAACGAATGGTGGAGGCTTTCAGGTGCTTCGATCGCGACGGAAATGGCTACATATCAGCGGCGGAGTTAGCCAGAGCAATGGCCAAACTGGGACAGCCTCTCACGTATCGAGAGCTCATGCAGATGATCAAAGATGCCGATGCCAATGGCGATGGCGTCATTAGCTTCGACGAGTTTGCCTCTGTAATGGCTAGGGCTAGATCAGGCAAGGGAAGCCTCTGA 837 0.503 MAASSSSSSSILQPEQQQAGLGETPALPTTTTPEAVPTASAWKSSGSIGPFFAVISVLTILAFLSCYLSRIWKRRRPLTPLECIENQGCFGSLNLMCRRCCTHVSVGNNKTNPIHNNDQANKVTDEIVQINQLREIFSRFDMDSDGSLTILELAALLRSLGLNPTGDQIHALLANVDSNRNGSVEFDELVKAILPETNQEMVMNQERMVEAFRCFDRDGNGYISAAELARAMAKLGQPLTYRELMQMIKDADANGDGVISFDEFASVMARARSGKGSL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1018 278 Pfam EF-hand domain pair 131 193 IPR002048 GO:0005509
Sto12g1018 278 Pfam EF-hand domain pair 206 268 IPR002048 GO:0005509
Sto12g1018 278 ProSiteProfiles EF-hand calcium-binding domain profile. 128 163 IPR002048 GO:0005509
Sto12g1018 278 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 127 271 - -
Sto12g1018 278 PANTHER CALCIUM BINDING PROTEIN 127 271 - -
Sto12g1018 278 MobiDBLite consensus disorder prediction 1 38 - -
Sto12g1018 278 SMART efh_1 168 196 IPR002048 GO:0005509
Sto12g1018 278 SMART efh_1 207 235 IPR002048 GO:0005509
Sto12g1018 278 SMART efh_1 243 271 IPR002048 GO:0005509
Sto12g1018 278 SMART efh_1 132 160 IPR002048 GO:0005509
Sto12g1018 278 ProSitePatterns EF-hand calcium-binding domain. 141 153 IPR018247 -
Sto12g1018 278 ProSitePatterns EF-hand calcium-binding domain. 252 264 IPR018247 -
Sto12g1018 278 ProSitePatterns EF-hand calcium-binding domain. 177 189 IPR018247 -
Sto12g1018 278 CDD EFh 210 269 IPR002048 GO:0005509
Sto12g1018 278 ProSitePatterns EF-hand calcium-binding domain. 216 228 IPR018247 -
Sto12g1018 278 Gene3D - 105 273 - -
Sto12g1018 278 ProSiteProfiles EF-hand calcium-binding domain profile. 239 274 IPR002048 GO:0005509
Sto12g1018 278 SUPERFAMILY EF-hand 129 270 IPR011992 -
Sto12g1018 278 ProSiteProfiles EF-hand calcium-binding domain profile. 164 199 IPR002048 GO:0005509
Sto12g1018 278 ProSiteProfiles EF-hand calcium-binding domain profile. 203 238 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1018 Sto-Chr12 6327837 6329680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1018 129 271 EF-hand Containing Proteins AT1G18530 72.727 3.67e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1018 K13448 - gmx:100795885 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1681 3 12867234 12867725 Sto12g1018 12 6327837 6329680 ECH
Sto12g1018 12 6327837 6329680 Sto12g1018 12 6327837 6329680 ECH