Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1542 ATGGTGGCCGACAAGAGCAAGAAGTTGAAAGTTGCGGACAAGGGTGAGAACGTGGAGGAAATTGACGGAGAGCTTGTCCTCTCCATTGAAAAGCTGCAGGAGATCCAGGATGAGCTCGAAAAGATTAATGAGGAGGCTAGTGATGAAGTTCTCGAAGTAGAGCAGAAGTACAATGAGATACGGAAGCCTGTGTACGACAAGAGAAATGAGATCATCAAATCTATTCCTGACTTCTGGACAACAGCTTTTCTGAGTCATCCTGCTCTTGGGGAGCTTCTGAATGAGGAAGATCAAAAGatatttaagtATTTGAGTTCTTTGGAGGTTGAAGATTTTAAGGATGTCAAATCAGGCTACTCAATTACATTTAATTTCAATCCCAATCCCTATTTCGAGGATACAAAGCTTACAAAGACTTATACCTTCCTTGAAGAAGGAACAACAAAGATCACTGCTACACCTATAAAATGGAAAGAGGGCAAGGGCATACCTAATGGAGTCCATGAGAAAAAAGGGAACAAGCGGGCTCCTACTGATATCAGTTTCTTTAGTTGGTTTAGTGACACTGAGCAGAAAGATGAGATGGATGACATGCACGATGAGGGAAAGGATGAAGATGActctgaagatgatgatgaccaAGAGGATGATGATGACGAGGGTGAGGAAGATGATGGCAAGTGA 684 0.4094 MVADKSKKLKVADKGENVEEIDGELVLSIEKLQEIQDELEKINEEASDEVLEVEQKYNEIRKPVYDKRNEIIKSIPDFWTTAFLSHPALGELLNEEDQKIFKYLSSLEVEDFKDVKSGYSITFNFNPNPYFEDTKLTKTYTFLEEGTTKITATPIKWKEGKGIPNGVHEKKGNKRAPTDISFFSWFSDTEQKDEMDDMHDEGKDEDDSEDDDDQEDDDDEGEEDDGK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1542 227 MobiDBLite consensus disorder prediction 182 227 - -
Sto3g1542 227 Coils Coil 25 59 - -
Sto3g1542 227 Gene3D Nucleosome assembly protein 74 225 - -
Sto3g1542 227 MobiDBLite consensus disorder prediction 199 227 - -
Sto3g1542 227 Pfam Nucleosome assembly protein (NAP) 29 73 IPR002164 GO:0005634|GO:0006334
Sto3g1542 227 Pfam Nucleosome assembly protein (NAP) 73 211 IPR002164 GO:0005634|GO:0006334
Sto3g1542 227 PANTHER TESTIS-SPECIFIC Y-ENCODED PROTEIN 2 201 IPR002164 GO:0005634|GO:0006334
Sto3g1542 227 SUPERFAMILY NAP-like 7 198 IPR037231 -
Sto3g1542 227 PANTHER NUCLEOSOME ASSEMBLY PROTEIN (NAP)-RELATED 2 201 - -
Sto3g1542 227 Gene3D - 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1542 Sto-Chr3 11413460 11419325 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1542 K11290 - gmx:100808081 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0894 12 5571413 5573636 Sto3g1542 3 11413460 11419325 CCT
Sto3g1542 3 11413460 11419325 Sto12g0894 12 5571413 5573636 ECH
Sto3g1542 3 11413460 11419325 Sto3g1542 3 11413460 11419325 ECH