LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto3g1488	ATGAAGAGAGGCAGGGGAGAAAAATTGGATAATTTCTTGTCATCAAATAGGCAAAGACCCTTTCAGATTCTAATCTTATTTGGATTATTGTATATATTGTTAATTACGCtggaaataccttttttgttcAAATCTGGGTATAGTGGTTTGTCACGGGAGTTGATTCCTCCTTCTAGGCTGGACAGCGAGCAGGATTTTGAACGAAGAGAAGCGCTAGTTCGTCCCCTTGAAACAGTTTCTTTAAATACTCACCAACTCGATCATAGGCATCTAACTGAGCACAAGATTCTCTCTGGCTTGGTATTCAATGACAGCACATTTCATTTGTGGGGTAGGGAAGGATCCTCGGAGCTTTACGAGTCTGCAAAGAATGCTTGGAAGGTGGGGAAGAAGATTTGGGAAGAGTTGGAAGCGATGAACTTGAGGAGCATTGCTGAAAAGTCTGAGAACGGATCAGAGTCATGTCCACCTTCGATTTCTCTATATGGGTCAGAGCTTTCGGCTCGTGGGCTGGTCATGGTCCTTCCTTGTGGACTGACATTGGGGTCCCACATAACGGTGGTAGGAAAGCCTTTGGCAGCAGAATCAAATCCTGTTCATTCAGTGATGTTGTCACAATTTGTCATGGAGTTGCAGGGGTTGAAGGCTGTGGACGCCGAGGATCCCCCAAGAATTTTGCATTATAACCCCAGGTTAAAGGGAGATTGGAGTGGGAAGCCTGTAATTGAGCAAAACACTTGTTACAGAATGCATTGGGGTTTGTCGCAGCGGTGTGATGGTGGGGAATCAAAGGCTGATGAAGAGACTGTTGATGGGCTGGTGAAGTGCGAGAAGTGGGTTCAGGATGATGACAGTCCTGAAGTGGAGTCCAAGGCAACATGGTGGTTTAATAGGCTTATAGGCCGAACCAGAAAAGTAACTGTTGACTGGCCATTCCCATTTGCCGAGGGCAAGCTATTTGTTCTTACTCTTAGAGCTGGATTGGAGGGCTATCATGTCAGTGTTGATGGGAGGCATGTGACCTCTTTTTCTTATCGCACTGGTTTTGCTCTAGAAGATGCCACTGGGCTTTCTTTGAGTGGGGACATCGATGTCCAATCTGTATTTGCTGCTTCTTTGCCTTCAGCGCATCCTAGTTTTGCTCCACAACAGCAGATTGACTTGTCAAGCAGATGGCGTGCCCCATCACTCCCTGAATTTGATGTAGAACTGTTCATCGGAGTTCTTTCTACTGGAAACCATTTTGCTGAGAGGATGGCTTTGAGGAAGTCATGGATGCAGCACAAGCTCATCAAATCTTCAAGAGTGGTGTCTCGTTTTTTTGTAGCACTACACTCAAGAAAAGAAGTGAATGTAGAGTTAAAAAAGGAAGCAGAATTTTTTGGTGATATTGTTATAGTGCCGTACATGGATAACTATGACCTTGTTGTCTTGAAAACAGTGTCCTTGTGTGAATATGGGATCCACACAGTTTCTGCTAAGTATATCATGAAGTGTGATGATGACACTTTCGTAAGAGTGGATGCTGTTTTAAATGAAGCAAGGAAAGTTCCGGATGATAGGAGCTTTTATATTGGTAACATGAATCAATTCTCCAAACCCTTGCGCAATGGTAAATGGGCTGTGACATACGAGGAGTGGCCAGAAGAGCGATACCCGCCCTATGCTAATGGACCAGGTTATATTATGTCTTCTGACATTGCACGTTTCATCTTATCTGAATTTGAGAGCCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGCGCAATTTAACAGCTCGAAACCAGTAGTTTATGTACATAGCTTAAAGTTCTGCCAGTTTGGCTGCATAGAAGACTATTACACAGCCCATTACCAATCGCCAAGGCAGATGAAGTGCCTCTGGGATAAATTGCAAACTCAGACAAGGCCTCAGTGCTGTAATATGAGATAA	1953	0.4357	MKRGRGEKLDNFLSSNRQRPFQILILFGLLYILLITLEIPFLFKSGYSGLSRELIPPSRLDSEQDFERREALVRPLETVSLNTHQLDHRHLTEHKILSGLVFNDSTFHLWGREGSSELYESAKNAWKVGKKIWEELEAMNLRSIAEKSENGSESCPPSISLYGSELSARGLVMVLPCGLTLGSHITVVGKPLAAESNPVHSVMLSQFVMELQGLKAVDAEDPPRILHYNPRLKGDWSGKPVIEQNTCYRMHWGLSQRCDGGESKADEETVDGLVKCEKWVQDDDSPEVESKATWWFNRLIGRTRKVTVDWPFPFAEGKLFVLTLRAGLEGYHVSVDGRHVTSFSYRTGFALEDATGLSLSGDIDVQSVFAASLPSAHPSFAPQQQIDLSSRWRAPSLPEFDVELFIGVLSTGNHFAERMALRKSWMQHKLIKSSRVVSRFFVALHSRKEVNVELKKEAEFFGDIVIVPYMDNYDLVVLKTVSLCEYGIHTVSAKYIMKCDDDTFVRVDAVLNEARKVPDDRSFYIGNMNQFSKPLRNGKWAVTYEEWPEERYPPYANGPGYIMSSDIARFILSEFESHKLRLFKMEDVSMGMWVAQFNSSKPVVYVHSLKFCQFGCIEDYYTAHYQSPRQMKCLWDKLQTQTRPQCCNMR	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto3g1488	650	Gene3D	-	400	646	-	-
	Sto3g1488	650	CDD	GLECT	175	369	IPR001079	GO:0030246
	Sto3g1488	650	SUPERFAMILY	Concanavalin A-like lectins/glucanases	173	369	IPR013320	-
	Sto3g1488	650	Gene3D	-	168	369	-	-
	Sto3g1488	650	ProSiteProfiles	Galactoside-binding lectin (galectin) domain profile.	171	371	IPR001079	GO:0030246
	Sto3g1488	650	PANTHER	HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5	9	650	-	-
	Sto3g1488	650	SMART	Gal_bind_lectin_2	175	370	IPR001079	GO:0030246
	Sto3g1488	650	Pfam	Galactoside-binding lectin	172	369	IPR001079	GO:0030246
	Sto3g1488	650	PANTHER	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE	9	650	IPR002659	GO:0006486\|GO:0016020\|GO:0016758
	Sto3g1488	650	Pfam	Galactosyltransferase	417	597	IPR002659	GO:0006486\|GO:0016020\|GO:0016758

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto3g1488	Sto-Chr3	10970408	10973606	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto3g1488	7	650	Glycosyltransferase	AT1G74800	62.784	0.0	853

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto3g1488	K20843		-	jre:108999254	943.725

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto3g1488	3	10970408	10973606	Sto12g0849	12	5326076	5329204	CCT
	Sto3g1488	3	10970408	10973606	Sto12g0849	12	5326076	5329204	ECH
	Sto3g1488	3	10970408	10973606	Sto3g1488	3	10970408	10973606	ECH