Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1477 ATGGCAGATAAGGATCAAGCAGAGAAGGGATCGAAGGCTGAGGTGAACATGTATCATCTGCACAGCTCGGATCATCCTGGGATGCCCTTAGTAAGTACTATTCTTGACGGAAAAAACTATTGGGCCTGGAGTATATCCATCATGACAGCTCTGGAGGCAAAAGACAAGATTGGATTCGTGGATGGATCTATAACGCCTCCAACGGATCCAGGTGAATTCAAGAAATGGAAAATGGCTGACTCAATGGTCAAGACGTGGATGGCGAATTCTATTTCAAAAGAAATTTCTGATATGTTTGTATTCTGCCGTTCATCTAAAGCCCTGTGGGATGTTTTGGCAGATAGGTACACCAGCTCTATTTCTCAGGGGAGTGATTCTGTCACTACCTACTTTAATAAGATAAATAGGTGTTGGGATGAATTGTCAAGACTGACACCCGTCCCAGCTTGCACCTGTGGGAAATGCGTTTGCGATCTGGAAAAGAGAGTAGCAGATCTTGATGAATTGATAAAGCTGATGCAGTTCTTGATGGGGCTGAATCCCACTTATGATGTCATAAGAACACATATCTTACATTTGACTCCTCTTCCCTCGATCAACAAAGCTTATGCTATGCTGCTCCGCCGCCTGTCGCCTAATTCCTCCGCCACCGGAATTAGATCTGCCGCCAGCATTTATTATCGGATTCAGTTCACCATGCCTCCTCCATCCTCATCTCCTTCGCAGAATTTGAAACAACGAGTTTTCACCTGCCTCAACAAGCTTTCCGACCGCGATACGCAGTCGCTCGCCGCCTCCGAGCTCCACTCCATTGCTCGGAACCTCGATCCGAACTCTGTGTCAGTGTTCCTCTCGTGTATACACTCCGCCGATGCGTCGGATAAATCTCCGGTTCGTAAGCAATGCGTGCAGGTGTTGGAGGTGCTTTCTGAGACGCACGGGAATGCGCTCTCGCCTTATCTTTCGAAGATTCTTGGCAATATAGTTCGTCGGCTCCGTGATACGGATTCGGCGCCGTTAGCGGAGGCGCTGTTCACTGAGCAGGACCAGAATTCGCAGATGGGCGCGGCGCTTTGTCTGGCTTCTGCGGTTGATTCTGTGCCGGATCCGGAACCGGCGAGATTGATGAAGCTCTTGCCGAGATTCGAGAAGTTGCTGAAGTGCGAGGGGTTTAAGGCCAAGCCGGCGCTGTTGACGCTGCTCGGAAGCGTAATTGAGGCTGGTGGAGCGTCGAGTCCTGGGGCTTTGAGAAACTTGGTTCCTTGTATGGTGGAATTCTTGGGTAGCAAAGACTGGGCGGCAAGAAAAGCTGCGGCTGAGGCATTGATGAAGTTGGCAATAGTGGAGAGGGATATGTTATCTGAATTCAAGGCTGGATGTTTGAAAGTTTTCGAGAGTCGACGATTCGATAAGGTGAAAGTAGTTCGGGAAGTCATGAGTCAGATGTTAGAGGTGTGGAAGCAGATGCCTGATGTTTCTGATGAATTCTCTCCCCCTCCTCAATCGCAAGCTTCTTCCAAAGAGAATGCTAGTGATGGGCGCTATCCACCTGTCGTGCAGAACTCATGTAGTCCCGGTTCTGTAATGTCCCAATTTCGGAAAAAATCCATTCCAGTTAGCAGATCAACCCCACCAGCTAGTTCTACTGCTAGCAATGCTAAGAAGATGAGTCCTTTAAGTAATAATAAGAGAATGAATTCAGCTGCGATGCGAAAACTAAACCATAAGAATTGGGATGTTCAAATTACTGTATCAAATGCTCCCTCTGCAACCATGGTTTACCAGGGTGATCTTGAAGAGAGGGATGGAGTTGTCCTAGAAAGAAGTAAAAAGGAGAAGACAAGATTTTCAAAGCCAGAAATGAAACGGGCTCTTTTTAGTAAAACTGCTGAAGATAAAATTCACAAGTTTGGTGGGTCCAAAAATGGATCTCGTGTTGTTCCATGTCCTGAAGAGGTACATGACTCAGTTGCTGTCAGTAATGTCACTAAAGAAATCCAGAGAAATGACAAAGAGGGTGACGATTTATCGGTGATCCGCAACCAATTATCTGAAATTGAAAAACAACAGTCAAGTCTGCTTGATCTTGTGCAGAAATTCATTGGAAGCTCACAAAATGGAATGCGATCTCTAGAGACTCGTGTGCATGGCCTCGAGTTGGCACTGGATGAGATCTCTTATGATTTAGCTGTATCAAGTGGAAGGATGACTACTTCTGATGCTCCTGGGGTGACTTGTTGTTTGCTACCTGGAGCAGAATTTTTGAGCTCCAAATTCTGGAGGAAAACACAGGATCGGTATTCATCCTTCCGGACCTCTAGGTCTGCTGCCACTCCATCACTAGCTGCCATGCAGTACAGATCTGAATGGAATGGCAATACTGAGACAAGCCGCAGGTTTAGGCTCCATGGTGATCGGGGGTTAATTACTAATCCGCTGGCAGAGATTCATTCTAACTCAAGGGAGACACCAGATATTGCACATTAA 2487 0.4676 MADKDQAEKGSKAEVNMYHLHSSDHPGMPLVSTILDGKNYWAWSISIMTALEAKDKIGFVDGSITPPTDPGEFKKWKMADSMVKTWMANSISKEISDMFVFCRSSKALWDVLADRYTSSISQGSDSVTTYFNKINRCWDELSRLTPVPACTCGKCVCDLEKRVADLDELIKLMQFLMGLNPTYDVIRTHILHLTPLPSINKAYAMLLRRLSPNSSATGIRSAASIYYRIQFTMPPPSSSPSQNLKQRVFTCLNKLSDRDTQSLAASELHSIARNLDPNSVSVFLSCIHSADASDKSPVRKQCVQVLEVLSETHGNALSPYLSKILGNIVRRLRDTDSAPLAEALFTEQDQNSQMGAALCLASAVDSVPDPEPARLMKLLPRFEKLLKCEGFKAKPALLTLLGSVIEAGGASSPGALRNLVPCMVEFLGSKDWAARKAAAEALMKLAIVERDMLSEFKAGCLKVFESRRFDKVKVVREVMSQMLEVWKQMPDVSDEFSPPPQSQASSKENASDGRYPPVVQNSCSPGSVMSQFRKKSIPVSRSTPPASSTASNAKKMSPLSNNKRMNSAAMRKLNHKNWDVQITVSNAPSATMVYQGDLEERDGVVLERSKKEKTRFSKPEMKRALFSKTAEDKIHKFGGSKNGSRVVPCPEEVHDSVAVSNVTKEIQRNDKEGDDLSVIRNQLSEIEKQQSSLLDLVQKFIGSSQNGMRSLETRVHGLELALDEISYDLAVSSGRMTTSDAPGVTCCLLPGAEFLSSKFWRKTQDRYSSFRTSRSAATPSLAAMQYRSEWNGNTETSRRFRLHGDRGLITNPLAEIHSNSRETPDIAH 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1477 828 Gene3D - 193 605 IPR011989 -
Sto3g1477 828 Pfam gag-polypeptide of LTR copia-type 21 67 IPR029472 -
Sto3g1477 828 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 339 826 - -
Sto3g1477 828 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 241 338 - -
Sto3g1477 828 MobiDBLite consensus disorder prediction 495 560 - -
Sto3g1477 828 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 339 826 IPR033337 GO:0005874|GO:0008017
Sto3g1477 828 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 241 338 IPR033337 GO:0005874|GO:0008017
Sto3g1477 828 MobiDBLite consensus disorder prediction 491 560 - -
Sto3g1477 828 SUPERFAMILY ARM repeat 199 493 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1477 Sto-Chr3 10850371 10872512 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1477 - - gmx:100778310 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1477 3 10850371 10872512 Sto12g0838 12 5255901 5258310 CCT
Sto3g1477 3 10850371 10872512 Sto12g0838 12 5255901 5258310 ECH
Sto3g1477 3 10850371 10872512 Sto3g1477 3 10850371 10872512 ECH