Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1424 ATGCCGGGAGTTGTTGCaaatggaggaggaggaggagtcaatgatgatgatgataagagggaagaaaatgaaaggaatGTGATGGATCCTTCTCCCTCTAAGGAAGCCTCAATTATGGTCAAGCCCGAAAACCACGAAAGGGAAGGACCGGAAGATTTCGGTGTTGATGGTGTCTCCATTGAGCAGCTTTATGAAAATGTGTGTGACATGCAGAGTTCTGATCAGTCACCTTCAAGGCAAAGCTTTGGATCTGATGGTGATGAGTCTAGGATTGATTCAGAGTTGCGTCATCTGGTGGGAGGGTCGATGAGGgaggtggagataatggaagaggaAATGGAGGAAAAGCCTGAAGCAACATCTTCTTCTAGAAAGGGTGGTGGTAGTTCATCAAATGGTAAGAAGTTGGAAAATGTGGATGAGATTCAACCTGCTGCAACTAGTGCAAGTACAACAAGTTCTGGTTCTGTTGAGAAACCAAACAAAGCATCCTCCAATTCAAAGTTGCAACAACAACCTAAGACATTGTCAAAACCAAGACCAAAAGCCAAAACTCTTCCTTCAAAGCCTCCTCCCATTGAGAGAAAGAACAATGACAAGGCTTTGACAAAACACAACACAGGAGTTAGTGCTACTACTAGTGTGAAGAAACCACAGAATTCTCCTTCTGGGAGGTCAACAACTTCACAAAATCGTGCCAAGAATTCTTCGGCCGAACCAACATCAGATAAACCCGAGATGGGACCGAGTTTACTAAAGCAAGCAATGGATCTACTTTCCTCTGGGGAAAATCCACAGAAGGCTCTTGAATTAGCTCTTCGAGCAACGAAAGTGTTCGAGAAGTATGCCAATGAGAAACCAAGCTTGGAGCTTGTTATGTGTTTACATGTCACTGCATCAATACATTGCAGCTTGGGCCAATACAACGATGCTATTCCAATTCTCAAGCGATCGATTGAGATTCCTGTTCTTGAGGAAGGCCAAGATCATGCCCTTGGTAAATTCGCCGGTCTTATGCAACTCGGTGACACCTATGCAATGCTGGGACAGCTTGAGAATTCAATCAAGTGCTACAACCAAGGCCTTGAAGTCCAGAGACAGGTTTTGGGAGAAACAGATCCAAGAGTTGGTGAAACTTGTAGGTATCTTGCTGAAGCTTATGTTCAAGCATTGCAATTTGATGAAGCTGAGAGGCTATGCCAAATGGCTTTGGAAACTCATAGAGCAAATGATTCACCTCCATCTCTTGAAGAGGCTGCTGATAGGAGGCTCATGGGACTTATATGTGAAACAAATGGAAAACATGAAGCAGCTCTAGAGCATCTTGTTCTAGCAAGCATGGCAATGGTAGCAAATGGGCAGGAAGTGGAAGTGGCATCTGTTGATTGCAGCATTGGAGACACTTACTTATCTTTGTCTCGATACGATGAGGCCATCTTTGCGTACCAGAAAGCCCTTACGGTTTTCAAGTCCACCAAAGGAGAGAATCATCCTGCTGTCGGTTTAGTGTTCGTTCGTCTCGCTGACTTGTTTAAAAGGACAGGGAAAATTAAGGAATCCAAATCTCACTGTGAGAATGCTCTTAGACTCTATGAAAAGCCTCTTCCTGGGGTCCCTCCCGAGGATATTGCCAGTGGTTTTGCGGACATTGCAGCTATCTATGAATCGATGGAGGACCACGAACAAGCTCTAAATTTACTGCAAAAGGCACTGGTTTTGTATAACAATGCACCTGGCCAGCAAAGCACAATAGCAGGAATAGAAGCTCAGATGGGGGTTTTGTACTACATTTTGGGAAACTACTCTGAATCTTACAACACTTTCAAGAGTGCTATCTCGAAGCTTCGCGCGATTGGAGAGAAGAAATCGGCCTTCTTCGGTATTGCCCTTAACCAAATGGGACTTGCTTGTGTTCAACGCTACTCGCTAAGTGAGGCTGCAGAATTGTTTGAAGAAGCAAAGACTATTTTGGAACAAGAATATGGACCATATCACCCTGAAACACTTGGAGTATACAGCAATCTAGCTGGTACATATGATGCAATtggcaggtatatatatatatatatctatatctatatatattcagtTAATTCATCTTTTAGTGTTGAATTAGATTATCCACGATATGATTTCGGTTCGATCTTTTTGAATTTCAGGCTGGACGACGCGATTGAAATTCTGGAGTATGTGGTGGGATTAAGAGAGGAGAAGCTTGGGACTGCAAATCCTGATGTGTATGATGAGAAGAGAAGGTTGAGTGAGTTGTTGAAGGAAGCAGGAAGAGTGAGGAATAGAAAATCAATGTCTCTTGAGCATCTTCTTGATTCCAATGTCGGTGGATTAAATAACCTTGTAATGAGGATGGAGTTGGCATTTAACGTCGATGTTTTCATGAGGATGCTCTCTGAGGACCTTGGCTTTCGCGGCCAAACCAGTTTTCATCCATTCATCTATGAAGTCACTGAGAAGAGAATCAAAGTTtcaatataa 2493 0.4124 MPGVVANGGGGGVNDDDDKREENERNVMDPSPSKEASIMVKPENHEREGPEDFGVDGVSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGSMREVEIMEEEMEEKPEATSSSRKGGGSSSNGKKLENVDEIQPAATSASTTSSGSVEKPNKASSNSKLQQQPKTLSKPRPKAKTLPSKPPPIERKNNDKALTKHNTGVSATTSVKKPQNSPSGRSTTSQNRAKNSSAEPTSDKPEMGPSLLKQAMDLLSSGENPQKALELALRATKVFEKYANEKPSLELVMCLHVTASIHCSLGQYNDAIPILKRSIEIPVLEEGQDHALGKFAGLMQLGDTYAMLGQLENSIKCYNQGLEVQRQVLGETDPRVGETCRYLAEAYVQALQFDEAERLCQMALETHRANDSPPSLEEAADRRLMGLICETNGKHEAALEHLVLASMAMVANGQEVEVASVDCSIGDTYLSLSRYDEAIFAYQKALTVFKSTKGENHPAVGLVFVRLADLFKRTGKIKESKSHCENALRLYEKPLPGVPPEDIASGFADIAAIYESMEDHEQALNLLQKALVLYNNAPGQQSTIAGIEAQMGVLYYILGNYSESYNTFKSAISKLRAIGEKKSAFFGIALNQMGLACVQRYSLSEAAELFEEAKTILEQEYGPYHPETLGVYSNLAGTYDAIGRYIYIYIYIYIYSVNSSFSVELDYPRYDFGSIFLNFRLDDAIEILEYVVGLREEKLGTANPDVYDEKRRLSELLKEAGRVRNRKSMSLEHLLDSNVGGLNNLVMRMELAFNVDVFMRMLSEDLGFRGQTSFHPFIYEVTEKRIKVSI 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1424 830 Gene3D Tetratricopeptide repeat domain 336 445 IPR011990 GO:0005515
Sto3g1424 830 MobiDBLite consensus disorder prediction 1 249 - -
Sto3g1424 830 MobiDBLite consensus disorder prediction 85 121 - -
Sto3g1424 830 SUPERFAMILY TPR-like 295 613 IPR011990 GO:0005515
Sto3g1424 830 MobiDBLite consensus disorder prediction 65 84 - -
Sto3g1424 830 Gene3D Tetratricopeptide repeat domain 446 624 IPR011990 GO:0005515
Sto3g1424 830 Coils Coil 557 577 - -
Sto3g1424 830 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515
Sto3g1424 830 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 18 778 - -
Sto3g1424 830 SUPERFAMILY TPR-like 419 532 IPR011990 GO:0005515
Sto3g1424 830 Pfam Tetratricopeptide repeat 629 667 - -
Sto3g1424 830 ProSiteProfiles TPR repeat profile. 544 577 IPR019734 GO:0005515
Sto3g1424 830 SUPERFAMILY TPR-like 542 685 IPR011990 GO:0005515
Sto3g1424 830 Gene3D Tetratricopeptide repeat domain 625 775 IPR011990 GO:0005515
Sto3g1424 830 SMART tpr_5 501 534 IPR019734 GO:0005515
Sto3g1424 830 SMART tpr_5 627 660 IPR019734 GO:0005515
Sto3g1424 830 SMART tpr_5 377 410 IPR019734 GO:0005515
Sto3g1424 830 SMART tpr_5 459 492 IPR019734 GO:0005515
Sto3g1424 830 SMART tpr_5 335 368 IPR019734 GO:0005515
Sto3g1424 830 SMART tpr_5 544 577 IPR019734 GO:0005515
Sto3g1424 830 SMART tpr_5 292 325 IPR019734 GO:0005515
Sto3g1424 830 SMART tpr_5 585 618 IPR019734 GO:0005515
Sto3g1424 830 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 18 778 - -
Sto3g1424 830 MobiDBLite consensus disorder prediction 39 54 - -
Sto3g1424 830 Gene3D Tetratricopeptide repeat domain 194 335 IPR011990 GO:0005515
Sto3g1424 830 MobiDBLite consensus disorder prediction 203 243 - -
Sto3g1424 830 MobiDBLite consensus disorder prediction 13 29 - -
Sto3g1424 830 MobiDBLite consensus disorder prediction 122 178 - -
Sto3g1424 830 Pfam Tetratricopeptide repeat 458 533 - -
Sto3g1424 830 Pfam Tetratricopeptide repeat 339 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1424 Sto-Chr3 10403947 10407989 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1424 - - gmx:100783201 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1424 3 10403947 10407989 Sto12g0798 12 5040403 5042709 CCT
Sto3g1424 3 10403947 10407989 Sto12g0798 12 5040403 5042709 ECH
Sto3g1424 3 10403947 10407989 Sto3g1424 3 10403947 10407989 ECH