Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0798 ATGCCAGGAATTGTCTCAAATAATGGATTTGAACATGAAGAAAGACCAAATGAAACGAATGGGAATCCTTCCCCTTGTAAGGAAACAACACCAGTCAAGTCCCAAAGGAGTTCCTTGAGTCCACAAAGTCCTGAGATTGAAGGTCCAGATTTACCTATTGATGGAGTACTGATTGATACCTCCATTGAGAAACTTTATGAAAATGTCTATGACATGCAAAGTTCTGATCACTCACCCTCAAGAGAAAGTCTTGGATCTGACGGTGAGGAGTCTAGGATTGATTCAGAATTGTGCCATCTAGTTGGACGACCAATGAGGGAGGTGGAAATAATGGAAAAGGAAGTGGAGGAGATTTCAGGAGGTGATTCCAGTAGTGAAACATCCTCTAGAAAAGGTGCTTCAGCCAATGGTAAGAAGTTGGCGCAGGCAGATGAGAAGATTCAATCTGCATCAAACTCACAGTTGGACCCTGAAACAACATCAAAATCAAAACCCAATGGAAAGAGTCCTCCTGCAAAGCCTCCTGTTATCAGTAGGAGGAATGGTAAGCCTTTGAGAAAGCAGCAAATTACTGGAGTTACTCGTGTGAAAAAATCGAAGAATTCCCCGATTGGAAGGTTAATGTCGCAAAACCGGGCTGAGAATTTGGCTGAATCAGTGCTAGACAAGCCAGAGCTGGGGCCAATTTTACTAAAGCAAGCCAGAGATTTTATTTCATCAGGAGATAATCCTCAGAAGGCTCTAGAATTAGCTCTTCTTGCAATGAAGTTATTTGAGAAGTATGCTAATGGAAAACCAAGTTTGGAGCTGGTTATGTGCCTACATGTTACTGCAGCAATATATTGCAGCTTAGGCCAATACCACGAGGCAATTCCAATTCTCGAGCGCTCTATTGAGATTCCCGTGATTGAGGAAGGCCAAGAGCACGCACTTGCTAAGTTCGCCGGTCACATGCAACTAGGTGACACCTATGCAATGTTAGGCCAGCTTGAAAATTCAGTTATGTGCTACACTACAGGATTGGATGTCCAAAGGGAAGTCTTGGGAGAAACAGACCCAAGAGTTGGCGAAACTTGTAGATACATGGCCGAAGCACATGTCCAAGCAATGCAATTTGATGAGGCAGAGAGACTCTGCCAAATGGCTCTGGACATCCATAGAGCAAATGGTTCACCCCCTTCTCTTGAGGAGGCAGCTGATAGGAGGCTCATGGGCCTTATATGTGAGACAAAGGGAAACCATGAAGCAGCTCTTGAGCATCTTGTTTTAGCCAGCATGGCAATGGTAGCTAATGGCCAGGAAATGGAAGTGGCATCTGTTGATAGTAGCATTGGTGACACATACTTGTCCTTGTCTCGGTACGACGAAGCCATTTTCGCTTATCAGAAAGCACTTACAGTTTTCAAGACCAGCAAAGGAGAGAACCACCCAGCCGTTGGTTCAGTCTTCGTACGTCTAGCTGACTTGTATAACAAGACAGGGAAGATAAGGGAATCAAAATCTTACTGTGAGAGTGCACTTAGAATCTACGAAAAGCCCATGCTTGGGGTCCCTCCTGAGGAGATTGCAAGTGGTCTTATGGATGTTTCAACTATCTACGAGTCAATGAACGAGCTCGAACAGGCTCTCAAGCTTCTTCGCAAAGCATTGGAGATATACAAGGATGCTCCTGGGCAGCAAAGCACAATAGCAGGAATTGAAGCTCAGATGGGGGTGATGAACTACATGTTGGGGAACTATACTGAGTCTTATAACACTTTCAAGAATGCTATATCGAAACTTCGTGCTATAGGAGAGAAGAAATCAGCATTCTTTGGTATTGCTCTCAATCAAATGGGACTTGCATGTGTTCAACGCTATGCCCTGGGTGAGGCTACAGAATTGTTTGAAGAAGCTAAGAACATAATGGAACAAGAGTTTGGAGCATATCACCCAGAAACTCTTGGAGTGTATAGCAATCTTGCAGGCACCTATGATGCAGTTGGCAGGGTGGATGAGGCAATTGAAATTCTGGAGTATGTAGTTAGTACGAGAGAGGAAAAACTAGGGACTGCACATCCTGATATGGATGATGAGAAGAGAAGGTTGGATGAATTGTTGAAGGAAGCAGGAAGAGTTAGGAGCACAAAAGCTAGGTCACTTGAGAAACTTCTTGATGCAAATGCCCCTCCATCTGTAAACAATAATAGCCTTGAAATCAACGTGTCACAATGTTAG 2217 0.4398 MPGIVSNNGFEHEERPNETNGNPSPCKETTPVKSQRSSLSPQSPEIEGPDLPIDGVLIDTSIEKLYENVYDMQSSDHSPSRESLGSDGEESRIDSELCHLVGRPMREVEIMEKEVEEISGGDSSSETSSRKGASANGKKLAQADEKIQSASNSQLDPETTSKSKPNGKSPPAKPPVISRRNGKPLRKQQITGVTRVKKSKNSPIGRLMSQNRAENLAESVLDKPELGPILLKQARDFISSGDNPQKALELALLAMKLFEKYANGKPSLELVMCLHVTAAIYCSLGQYHEAIPILERSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSVMCYTTGLDVQREVLGETDPRVGETCRYMAEAHVQAMQFDEAERLCQMALDIHRANGSPPSLEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEMEVASVDSSIGDTYLSLSRYDEAIFAYQKALTVFKTSKGENHPAVGSVFVRLADLYNKTGKIRESKSYCESALRIYEKPMLGVPPEEIASGLMDVSTIYESMNELEQALKLLRKALEIYKDAPGQQSTIAGIEAQMGVMNYMLGNYTESYNTFKNAISKLRAIGEKKSAFFGIALNQMGLACVQRYALGEATELFEEAKNIMEQEFGAYHPETLGVYSNLAGTYDAVGRVDEAIEILEYVVSTREEKLGTAHPDMDDEKRRLDELLKEAGRVRSTKARSLEKLLDANAPPSVNNNSLEINVSQC 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0798 738 Coils Coil 689 709 - -
Sto12g0798 738 Pfam Tetratricopeptide repeat 278 305 IPR019734 GO:0005515
Sto12g0798 738 Gene3D Tetratricopeptide repeat domain 317 424 IPR011990 GO:0005515
Sto12g0798 738 Gene3D Tetratricopeptide repeat domain 183 316 IPR011990 GO:0005515
Sto12g0798 738 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 721 - -
Sto12g0798 738 Gene3D Tetratricopeptide repeat domain 600 723 IPR011990 GO:0005515
Sto12g0798 738 MobiDBLite consensus disorder prediction 145 167 - -
Sto12g0798 738 Pfam Tetratricopeptide repeat 607 672 - -
Sto12g0798 738 Pfam Tetratricopeptide repeat 437 512 - -
Sto12g0798 738 MobiDBLite consensus disorder prediction 69 210 - -
Sto12g0798 738 SUPERFAMILY TPR-like 444 676 IPR011990 GO:0005515
Sto12g0798 738 Gene3D Tetratricopeptide repeat domain 425 599 IPR011990 GO:0005515
Sto12g0798 738 SUPERFAMILY TPR-like 357 515 IPR011990 GO:0005515
Sto12g0798 738 MobiDBLite consensus disorder prediction 82 120 - -
Sto12g0798 738 ProSiteProfiles TPR repeat profile. 523 556 IPR019734 GO:0005515
Sto12g0798 738 ProSiteProfiles TPR repeat profile. 438 471 IPR019734 GO:0005515
Sto12g0798 738 SUPERFAMILY TPR-like 563 705 IPR011990 GO:0005515
Sto12g0798 738 MobiDBLite consensus disorder prediction 121 135 - -
Sto12g0798 738 Coils Coil 536 556 - -
Sto12g0798 738 MobiDBLite consensus disorder prediction 19 44 - -
Sto12g0798 738 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 721 - -
Sto12g0798 738 MobiDBLite consensus disorder prediction 1 55 - -
Sto12g0798 738 SUPERFAMILY TPR-like 240 345 IPR011990 GO:0005515
Sto12g0798 738 Pfam Tetratricopeptide repeat 528 558 - -
Sto12g0798 738 SMART tpr_5 648 681 IPR019734 GO:0005515
Sto12g0798 738 SMART tpr_5 480 513 IPR019734 GO:0005515
Sto12g0798 738 SMART tpr_5 564 597 IPR019734 GO:0005515
Sto12g0798 738 SMART tpr_5 523 556 IPR019734 GO:0005515
Sto12g0798 738 SMART tpr_5 314 347 IPR019734 GO:0005515
Sto12g0798 738 SMART tpr_5 606 639 IPR019734 GO:0005515
Sto12g0798 738 SMART tpr_5 271 304 IPR019734 GO:0005515
Sto12g0798 738 SMART tpr_5 438 471 IPR019734 GO:0005515
Sto12g0798 738 SMART tpr_5 356 389 IPR019734 GO:0005515
Sto12g0798 738 MobiDBLite consensus disorder prediction 184 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0798 Sto-Chr12 5040403 5042709 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0798 - - jre:108991469 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1424 3 10403947 10407989 Sto12g0798 12 5040403 5042709 CCT
Sto3g1424 3 10403947 10407989 Sto12g0798 12 5040403 5042709 ECH
Sto12g0798 12 5040403 5042709 Sto12g0798 12 5040403 5042709 ECH