Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1385 ATGAAGGCAACACTAAGATACTTAGCAGGAATTGCAGGCCCAAGTGGTTTCGGCTCTAATTCCACTGCTGAACAAGTTACTGATCAACATTCTTCTTCTAATTCCCATCTTACTGCTCTCATCactgGTGGGACTTCTGGGATCGGAGCAGAAACAGCAagagtgttagcaaaaagaggAGTGAGAATTGTGATTGGAGCGAGAGATATGAAGAAAGGGAGAGAAGTGAGAAATAATATTCAGAAAGAGAGTCCAAAGGCTCAGGTTTTAGTGTTGGAGATTGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGTTCTGAGTTTTTAGCTCTTAATCTTCCCCTTAATATCCTCATAAATAATGCTGGAATATTCTCTCAGAACTTGGAGTTCTCCGAAGAGAAAATTGAGACGACGTTTGCTACCAATTACTTAgGGCATTTTTTATTGACAGAAATGCTTTTAGAAAAGATGATAGAAACATCAGAGAAGACAGGCATTGAAGGAAGAATAATAAACGTTTCCTCTGTGATTCATAGCTGGGTCAAAAGAGATTCCTTTCGTTTCCACAACTTGCTCAATGGAACAAATTATAATGGCACACGCGCTTATTCTCAATCAAAATTGGCCAATATTTTGCATGCCAAGGAATTGGCCAGACAGCTCAAGGCGAGGAATGCAAGAGTAACTGTGAATGCAGTTCATCCAGGGATTGTGAAGACAGGAATTATCAGAGCTCACAAAGGCTTAATAACAGATTCCCTGTTCTTCATTGCATCAAAGTTACTCAAATCAACATCTCAGggTGCATCAACAACTTGTTATGTTGCTCTGAGTCCACAAACAGAAGGGATGAGTGGGAAATACTTCGCAGATTGTAACGAGAGCAATTGTTCGAGTTTAGCAAATGATGAATTTGAAGCTCAAAAGCTATGGAATAACACTCGTGCCTTGCTTCAGAAACGACTGCGTCAAGCAGCAATTtga 990 0.3869 MKATLRYLAGIAGPSGFGSNSTAEQVTDQHSSSNSHLTALITGGTSGIGAETARVLAKRGVRIVIGARDMKKGREVRNNIQKESPKAQVLVLEIDLSSFASVQRFCSEFLALNLPLNILINNAGIFSQNLEFSEEKIETTFATNYLGHFLLTEMLLEKMIETSEKTGIEGRIINVSSVIHSWVKRDSFRFHNLLNGTNYNGTRAYSQSKLANILHAKELARQLKARNARVTVNAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSTSQGASTTCYVALSPQTEGMSGKYFADCNESNCSSLANDEFEAQKLWNNTRALLQKRLRQAAI 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1385 329 CDD retinol-DH_like_SDR_c_like 38 313 - -
Sto3g1385 329 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 324 - -
Sto3g1385 329 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 IPR002347 -
Sto3g1385 329 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 178 IPR002347 -
Sto3g1385 329 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 224 IPR002347 -
Sto3g1385 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 297 IPR036291 -
Sto3g1385 329 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Sto3g1385 329 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Sto3g1385 329 PRINTS Glucose/ribitol dehydrogenase family signature 164 180 IPR002347 -
Sto3g1385 329 PRINTS Glucose/ribitol dehydrogenase family signature 205 224 IPR002347 -
Sto3g1385 329 PRINTS Glucose/ribitol dehydrogenase family signature 228 245 IPR002347 -
Sto3g1385 329 Pfam short chain dehydrogenase 38 179 IPR002347 -
Sto3g1385 329 Gene3D - 23 325 - -
Sto3g1385 329 PANTHER RETINOL DEHYDROGENASE 4 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1385 Sto-Chr3 10101968 10106172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1385 38 247 Acyl Lipid Metabolism Gene Families AT3G55310 30.876 9.09e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1385 - - gmx:100801384 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1385 3 10101968 10106172 Sto12g0761 12 4758132 4761479 CCT
Sto3g1385 3 10101968 10106172 Sto3g1385 3 10101968 10106172 ECH