Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1368 ATGGATCCTAACCCTGGAATCTTCCCTCATCTCTCCTACGTCATGTCCCGTCTCCCTTCCCTCACTCGCAAAAACGATTCTCACAATTCCGATTCCAATTCCCTCCAATTCGACATCGAACAGCCCCGCCTCCCTCCTCCCTCCGACCCTTCCTCTTCCAATACGACGTCGCATCATGTCAACATTACGGACCCTAAGCTCTTGGCCTCCATGACCCGCACCATCTACGACGTCGCCCAGACCCGATCCATGCTCAAGGTCATCGGCGAGCGACCCGACCACGAGGCCGTCGACAACGCCAAGGCCAAGCTCGCCGATCTCGATGCCCATTTGTCTCGACAGCTGGAAGAGATCGTGATGTCCCCTGCGCCTTCGAATGTCGCGCCGATTCAGTGGCGGCACCAGCAGGCGCAGAAAGAGAAGGAGTGCCGGAAATTGGCGGAGGATGAGAAGCGCGTGTACAAAGCGGTGATTCAATTGGATGAGATGCACGATGCTTATGAGAAATTGCTTCACGACGCTGAGAAGAGATTGGTTCAGATTTATAGTTCCGCCGGTGAGGCGACGGAGTGTGTGGGAGAGGAGAAGCCGGGGATTGATGATGAGGTTAACGAAGAGGTTGTGGGGATTCTGCAGAAGGCGTATGGACATGGGATGGAACGGATTGATCTCTCCAATCGCGGCCTCAGGATGCTGCCTGAGGCGTTTGGACGCGTTTCTGGGTTGGTGGTGCTTAATGTTTCAACCAATCAGTTGGTGGCGATTCCTGACTCTATAGCTGGATTGCAAAACCTGGAGGAGCTTAACGTCTCAGCAAATAATTTGGAGGCACTGCCTGATTCAATTGGCTTGTTACAAAAGTTGAAACTCCTGATTGTCTGTGGGAACAAACTCACTGCCCTTCCTGATTCCATCTGTCATTGCAAGTCGTTGGTGGAGCTGGATGCAAGTTTCAATCAGCTCAAGTACTTGCCTACGAACATTGGATATGAATTACAGCACTTAGAGAAGCTGATGATTTTTCTGAACAAGATTCGGTCATTTCCCTCATCTGTTTGTGAGATGAGATCCTTGCGGTATCTGGATGCTCATTTCAATGAGCTGCATGGACTTCCTAGTGCATTTGGAAGACTGACCAATCTTGAGGTTCTGAACCTGAGCAGTAATTTCAGCGACCTTCAAGAACTTCCTGAGACATTTGGTGATCTGATAAAGCTCAAGGAATTGGATCTCAGCAACAATCAGATTAGTGCACTCCCTAACACATTTGGTCGGCTTGATAGTTTGAGCAAACTCAACCTAGAGCAGAACCCTCTAGAAGTGCCCCCAAAAGAGATTGTAAAGCAAGGGGTTCAAGCAGTGAGAAATTATATGACTAGGAGGTGGGTGGATATACTGAATGAGGAGGAAAGAAGCAGGGTTGAAATGCAAGAACAAGAACAAATGGGGTGGTTAACTCGCAGCACCTCCTGGCTTAAGAACGTTTCTGAAAGTGTTTCAGGATCTCCTAGAGATCCTAAAGAGTCTTATCTTCAGGAGCAGCTATGA 1548 0.4929 MDPNPGIFPHLSYVMSRLPSLTRKNDSHNSDSNSLQFDIEQPRLPPPSDPSSSNTTSHHVNITDPKLLASMTRTIYDVAQTRSMLKVIGERPDHEAVDNAKAKLADLDAHLSRQLEEIVMSPAPSNVAPIQWRHQQAQKEKECRKLAEDEKRVYKAVIQLDEMHDAYEKLLHDAEKRLVQIYSSAGEATECVGEEKPGIDDEVNEEVVGILQKAYGHGMERIDLSNRGLRMLPEAFGRVSGLVVLNVSTNQLVAIPDSIAGLQNLEELNVSANNLEALPDSIGLLQKLKLLIVCGNKLTALPDSICHCKSLVELDASFNQLKYLPTNIGYELQHLEKLMIFLNKIRSFPSSVCEMRSLRYLDAHFNELHGLPSAFGRLTNLEVLNLSSNFSDLQELPETFGDLIKLKELDLSNNQISALPNTFGRLDSLSKLNLEQNPLEVPPKEIVKQGVQAVRNYMTRRWVDILNEEERSRVEMQEQEQMGWLTRSTSWLKNVSESVSGSPRDPKESYLQEQL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1368 515 MobiDBLite consensus disorder prediction 22 64 - -
Sto3g1368 515 Pfam Leucine rich repeat 264 321 IPR001611 GO:0005515
Sto3g1368 515 Pfam Leucine rich repeat 397 439 IPR001611 GO:0005515
Sto3g1368 515 SMART LRR_typ_2 355 377 IPR003591 -
Sto3g1368 515 SMART LRR_typ_2 426 449 IPR003591 -
Sto3g1368 515 SMART LRR_typ_2 378 402 IPR003591 -
Sto3g1368 515 SMART LRR_typ_2 285 308 IPR003591 -
Sto3g1368 515 SMART LRR_typ_2 239 261 IPR003591 -
Sto3g1368 515 SMART LRR_typ_2 332 353 IPR003591 -
Sto3g1368 515 SMART LRR_typ_2 403 425 IPR003591 -
Sto3g1368 515 SMART LRR_typ_2 262 284 IPR003591 -
Sto3g1368 515 SMART LRR_typ_2 309 331 IPR003591 -
Sto3g1368 515 SMART LRR_bac_2 262 281 - -
Sto3g1368 515 SMART LRR_bac_2 403 422 - -
Sto3g1368 515 SMART LRR_bac_2 308 327 - -
Sto3g1368 515 SMART LRR_bac_2 355 374 - -
Sto3g1368 515 SMART LRR_bac_2 332 351 - -
Sto3g1368 515 SMART LRR_bac_2 285 304 - -
Sto3g1368 515 SMART LRR_bac_2 239 258 - -
Sto3g1368 515 SMART LRR_bac_2 378 399 - -
Sto3g1368 515 MobiDBLite consensus disorder prediction 22 39 - -
Sto3g1368 515 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 6 500 - -
Sto3g1368 515 PANTHER LEUCINE-RICH REPEAT-CONTAINING 6 500 - -
Sto3g1368 515 MobiDBLite consensus disorder prediction 495 515 - -
Sto3g1368 515 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515
Sto3g1368 515 ProSiteProfiles Leucine-rich repeat profile. 264 285 IPR001611 GO:0005515
Sto3g1368 515 Coils Coil 157 177 - -
Sto3g1368 515 Gene3D Ribonuclease Inhibitor 327 460 IPR032675 -
Sto3g1368 515 Gene3D Ribonuclease Inhibitor 131 323 IPR032675 -
Sto3g1368 515 Coils Coil 97 117 - -
Sto3g1368 515 SUPERFAMILY L domain-like 218 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1368 Sto-Chr3 9924395 9927195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1368 219 446 Receptor kinase-like Gene Family AT2G41820 30.916 1.42e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1368 - - gmx:100803823 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1368 3 9924395 9927195 Sto12g0743 12 4637729 4641452 CCT
Sto3g1368 3 9924395 9927195 Sto3g1368 3 9924395 9927195 ECH