Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2488 ATGAGAAGAATGGTCAAACATTATCAGTGGTGCCAGTCAATGGTAGTTAAACCTCTCTCTAAgccatttcttctctctttcatttCTGTGGAGGAGCCTCTTGCTTTTTGGTTCTCTGAGATCTCTACTCCCTCTGATCCCGAAACCATTATTTTCTCGATAATTATTCTCTGCAATTTCTGGGTTTACATGGCGCAAAATTCTCATGTACCAAAATTTGGCAATTGGGAAAGTGAAGAGAACGTTCCATATACAGCTTATTTTGACAAGGCACGAAAAGGTCGAACCAGCACGAAGACAATAAATCCAAATGATCCTGAGGAAAGTCCAGATCTAGCTGCTGATAATGTAAGCAATAGAAATGGCAGTGATTCCACACATCATCATGGAGAGCATGGTGCAGTTTCTACTGATACACATAGAAAACCTGCAAGACAAAGTACTGGGTCTGAAAACAGCATTGAACGATCTCCACTTCATCGCCAAGCGAAGACTCCAGGAAGAGATGGTCACAATGGGGAAGCAAAGAATTCCTATGACAGCAGCCATGGCACACCGGGAAGATCTCGACTAAAACCGGTTAATCGAGGCGATGAAACAGTCTACAACATGCAACATAACACCTATTCTCTGAAACTTATTTACCATCCGAAGGCTGTGCAACATTTAGTGGcagatggagatggagatgcTGCTGTTCCAAAATTTGGAGAGTGGGATGAGAGTGATCCTGCCTCTGCTGATGGCTTCACTCACATTTTCAACAAAGTAAGAGAGGAGAGACAGGGTGCTAAACAAGCACCTGGTACACCTACACAGAGATCATATATTACCAGGAGCCAAGCCAACGATGACAAAGCTCAGGTACACAAACACAAGCAATCTGTGAAGCTTGAGTAA 900 0.4122 MRRMVKHYQWCQSMVVKPLSKPFLLSFISVEEPLAFWFSEISTPSDPETIIFSIIILCNFWVYMAQNSHVPKFGNWESEENVPYTAYFDKARKGRTSTKTINPNDPEESPDLAADNVSNRNGSDSTHHHGEHGAVSTDTHRKPARQSTGSENSIERSPLHRQAKTPGRDGHNGEAKNSYDSSHGTPGRSRLKPVNRGDETVYNMQHNTYSLKLIYHPKAVQHLVADGDGDAAVPKFGEWDESDPASADGFTHIFNKVREERQGAKQAPGTPTQRSYITRSQANDDKAQVHKHKQSVKLE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2488 299 MobiDBLite consensus disorder prediction 157 176 - -
Sto1g2488 299 MobiDBLite consensus disorder prediction 122 139 - -
Sto1g2488 299 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 64 123 - -
Sto1g2488 299 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 228 289 - -
Sto1g2488 299 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 115 200 - -
Sto1g2488 299 MobiDBLite consensus disorder prediction 140 156 - -
Sto1g2488 299 MobiDBLite consensus disorder prediction 259 299 - -
Sto1g2488 299 MobiDBLite consensus disorder prediction 95 197 - -
Sto1g2488 299 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 228 289 IPR040387 -
Sto1g2488 299 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 115 200 IPR040387 -
Sto1g2488 299 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 64 123 IPR040387 -
Sto1g2488 299 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 230 262 IPR008700 -
Sto1g2488 299 MobiDBLite consensus disorder prediction 284 299 - -
Sto1g2488 299 MobiDBLite consensus disorder prediction 266 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2488 Sto-Chr1 32381687 32383942 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2488 K13456 - gmx:100499218 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0788 6 7910121 7911450 Sto1g2488 1 32381687 32383942 CCT