Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2275 ATGAGAGAAGAACGAGCCCTTGTTACAACGCGAAACATCCCCAACCTCAAATCCTCCTTAGACGCCGTCGTTCACCCCGACGACCATCAGCCGCTGTGGAAGAAGACCAATCTCAGTTTCTCCGTCGCCGGTACCTCCGGCGTCGATGCTACCAAATTCGCCTCTGTTTCGGTGGCGGACAGGAAAGTTGATAGTGAATTCATGCCGACTACGGCTCAGCTCCTGAAGCATCCACTGGCTATCGTCGCATTGGTGCCCAAAGACGCTGCCCTGTTCTTCGCCGGAGCCATTGCCGGCGCTGCGGCTAAGACTCTCACCGCTCCGCTGGATCGTATCAAGATCCTTATGCAGACTCATGGGGTACGAGTTGGGCAAGAAAGTGCTAAGAAGGCAATGGGTTTCATTGAGGCTATAACAGTTATAGGCAAGGAAGAAGGAATTAGAGGTTACTGGAAGGGCAACCTCCCCCAGGTGATTCGAATCATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAACCTATAAGAAAATATTCAAGGGAAAAAATGGTGAGCTCTCTGTCTTTGGAAGACTTGCAGCAGGTGCTTTTGCTGGCATGACATCCACTTTTATAACTTACCCATTAGATGTCCTGAGATTAAGATTAGCTGTTGAACCAGGTTACCGAACCATGACGGAGGTAGCCTTGGGCATGCTAAGAGATGAAGGATTTGCATCTTTCTACTATGGTTTGGGGCCTTCTCTAATTGGAATAGCTCCTTATATTGCAGTGAACTTTTGTGTCTTCGActtAATGAAGAAGTCTTTGCCAGAGAAATATCAAAAGAGAACTGAAACGTCTCTACTAACTGCTGTGCTTTCGGCTTCCCTTGCCACACTTACATGCTACCCTCTAGACACTGTGCGAAGACAAATGCAAATTAAGGGTACACCTTACAAGACAGTTTTTGATGCCCTTACTGGTATTGTAGCTCAGGATGGAGTTATTGGCTTGTACCGTGGATTTGTACCCAATGCCTTGAAAAACCTACCAAGCAGCAGCATCAGGCTTACCACATATGACATTGTTAAACGTCTAATTGCTGCTAGTGAGAAAGAGTTTCACAAAATTACAGAGGAAAATCGCTCAAAACAAACAAACACCAAGAATCAATAA 1158 0.4611 MREERALVTTRNIPNLKSSLDAVVHPDDHQPLWKKTNLSFSVAGTSGVDATKFASVSVADRKVDSEFMPTTAQLLKHPLAIVALVPKDAALFFAGAIAGAAAKTLTAPLDRIKILMQTHGVRVGQESAKKAMGFIEAITVIGKEEGIRGYWKGNLPQVIRIIPYSAVQLFAYETYKKIFKGKNGELSVFGRLAAGAFAGMTSTFITYPLDVLRLRLAVEPGYRTMTEVALGMLRDEGFASFYYGLGPSLIGIAPYIAVNFCVFDLMKKSLPEKYQKRTETSLLTAVLSASLATLTCYPLDTVRRQMQIKGTPYKTVFDALTGIVAQDGVIGLYRGFVPNALKNLPSSSIRLTTYDIVKRLIAASEKEFHKITEENRSKQTNTKNQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2275 385 ProSiteProfiles Solute carrier (Solcar) repeat profile. 186 269 IPR018108 -
Sto1g2275 385 Pfam Mitochondrial carrier protein 280 362 IPR018108 -
Sto1g2275 385 Pfam Mitochondrial carrier protein 91 182 IPR018108 -
Sto1g2275 385 Pfam Mitochondrial carrier protein 185 272 IPR018108 -
Sto1g2275 385 PANTHER SOLUTE CARRIER FAMILY 25 7 374 - -
Sto1g2275 385 Gene3D Mitochondrial carrier domain 88 361 IPR023395 -
Sto1g2275 385 PRINTS Mitochondrial carrier protein signature 91 104 IPR002067 GO:0055085
Sto1g2275 385 PRINTS Mitochondrial carrier protein signature 104 118 IPR002067 GO:0055085
Sto1g2275 385 PRINTS Mitochondrial carrier protein signature 153 173 IPR002067 GO:0055085
Sto1g2275 385 PRINTS Mitochondrial carrier protein signature 201 219 IPR002067 GO:0055085
Sto1g2275 385 PRINTS Mitochondrial carrier protein signature 242 260 IPR002067 GO:0055085
Sto1g2275 385 PRINTS Mitochondrial carrier protein signature 285 307 IPR002067 GO:0055085
Sto1g2275 385 ProSiteProfiles Solute carrier (Solcar) repeat profile. 86 178 IPR018108 -
Sto1g2275 385 ProSiteProfiles Solute carrier (Solcar) repeat profile. 276 360 IPR018108 -
Sto1g2275 385 SUPERFAMILY Mitochondrial carrier 89 356 IPR023395 -
Sto1g2275 385 PANTHER ADP/ATP CARRIER PROTEIN 7 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2275 Sto-Chr1 30739074 30743146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2275 1 378 Organic Solute Cotransporters AT3G51870 68.602 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2275 K14684 - gmx:100796878 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2275 1 30739074 30743146 Sto6g0515 6 5594026 5599498 CCT
Sto1g2275 1 30739074 30743146 Sto1g2275 1 30739074 30743146 ECH