Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1781 ATGGGAGGTCAACATCAGTATGGGGTGATGCATGGATTCCGGGAATGTATCCTTTTTCGATTGCAAAAACCGGCCAATATTATTACTGGGGAGCTGCGGGTGGGTGACTTATTGGATGATATGGGTTCATGGAGGGATGatgttttaaatttctttttcacaGAAGACATTTGTCGCCGTATTAAGAGCATGAGCGCACGGGATGTGAGAGTGAGTGATAGGTGGACTTGGTTGGGTGATGCAAAAAGAGGCTTCTCAGTGAAACAATGCTATCTGAAGGCTATGCAGAACAAATGGCAAGCAATTGATTTAATGCCTAATATCCAAGGAGGGGTTCACAATGATTTCTGGAAAAGATTATGGAAGCTGCCTGTAGCTCCGAAGTacaaaaatctggtgtggagaGCTTGTGTTGGTATTCTACCTACGTGTGTGGCGTTAAATCATAAGGGTGTCGAGATGGGGTTAGCATGTACCTTTTGTGGGTGTGAGGATGAAGAGACGTTCCATGTGTTAGTAGATTGTCCACGACTTCATGGGCTTTGGAGTGGGTCACGGTTTGACTTTGGAAGCAGATTATGGCATAATAATATCACGGAATGGTTGGCAGTGGAGGGCGTGGCCTGGACCCAAGAACAATGGGGTATGTGTGTGATTGCTCTGTATTTGTTGTGGGAGGCCAGGAATGCAATCAGGTTTTCGAATGCAAGGCTATGTATTGACCAGTTCTGGTGCAGAGTGGAGGCAGTGTGGGAAGAACTACAAGATTTAAAATCTTGGAAGGAGTGGAATAACATGTTTGGGCGGAGCTTGAGATGGGAGAAACCAACGATGGGGACGGTGAAGCTCAACACTGATGCGGGCACGTTAGCGGAGGGAGGTGGGGTGATAGGAGGCCTTTTGCGTGATGGAAATGGGGTATGTGTGGCTGCGTTTACTGAAATGGTGGATATGAGTTACAATGCAACGGTGTTAGAGGCGAAAGCCATTAAAAGAGGTATGGAAGTGGctatgggtttgggatttgaacGTGTAGTGTGTGAGTCAGATGCAAAGGTGGTGTTGGACTTTTTGATGAACATGGAGGCCCCTCTATGTCAGCTGCGTACCACTTGCCAACAAATTGTAAATCTGAAATCTTTCTTTAGTAGTATTGAGTTCTCATGGGTGCCAAGATGCTGTAACAAGGCATCccattttcttgtttcttttgctAACAATTATGTTCAGGATAACTTGTGGATAGATCAGTTACCAAGTTTCCTTTCGGATGGATTAGACTTTGTGGTGTCAGAAGCTGGGAAATATGGGGTGCGACTGATAATGACGTTGGTAAACAATTGGAGTGATTATGGTGGGAAAAGTCAGTACATCCAATGGGCAAGGAATAGTGGCCAATATATCAATAATGACGATGATTTCTTCACGCATCCTGTTATTAAGCAGTATTACAAGAACCATATTAAGGCTGTGTTGACAAGAAATAACACAATAACTGGAGTGACATATAAAGATGATCCTGCAATATTCGCATGGGAACTTATGAATGAACCTCGTTCGCAATACGATTACTCTGGAAAAATTATTCAGGACTGGGTGAGTGAGATGGCTTCCTATGTTAAATCCATCGATAACAAACATTTATTAGAAGTGGGGCTAGAAGGGTTTTATGGCGAATCAGTGCCCGAAAGGAAGGAAATCAATCCTGGATACGAAGTTGGAACTGATTTCATTTCCAATAATCAAGTTCCTGAAATCGATTTTGCCACAATTCATCTCTACCCAGATCAATGGGTACCTAGCGCAGATGAAGCGGGCCAGTCTGCATTTGTTGAGAAATGGGTCCAGGCCCATATCGAAGATGCTGATAAGGTTTTACAAAAGCCCATACTTTTAAGTGAATTTGGAAAGTCTTCAAGATCATCAGGATATAGTGTGGATAAGAGGAACAACTATTATCAAACGTtgtatgattttatatataatagtgCTAGAAGTGGGGGTTCATGTGCTGGTGGGCTTTTCTGGCAGCTCATGTCCCAAGGAATGGATGGCTTTCGAGACGGCTATGAAGTTATCTTTGAAGAAGGACAATCCACTGCTGGTGTTATTGAACAACAATCTCAGAAAATGTCCTCACTCTCTTCCGATAACCAATCCTTTCGCCTTTGA 2172 0.418 MGGQHQYGVMHGFRECILFRLQKPANIITGELRVGDLLDDMGSWRDDVLNFFFTEDICRRIKSMSARDVRVSDRWTWLGDAKRGFSVKQCYLKAMQNKWQAIDLMPNIQGGVHNDFWKRLWKLPVAPKYKNLVWRACVGILPTCVALNHKGVEMGLACTFCGCEDEETFHVLVDCPRLHGLWSGSRFDFGSRLWHNNITEWLAVEGVAWTQEQWGMCVIALYLLWEARNAIRFSNARLCIDQFWCRVEAVWEELQDLKSWKEWNNMFGRSLRWEKPTMGTVKLNTDAGTLAEGGGVIGGLLRDGNGVCVAAFTEMVDMSYNATVLEAKAIKRGMEVAMGLGFERVVCESDAKVVLDFLMNMEAPLCQLRTTCQQIVNLKSFFSSIEFSWVPRCCNKASHFLVSFANNYVQDNLWIDQLPSFLSDGLDFVVSEAGKYGVRLIMTLVNNWSDYGGKSQYIQWARNSGQYINNDDDFFTHPVIKQYYKNHIKAVLTRNNTITGVTYKDDPAIFAWELMNEPRSQYDYSGKIIQDWVSEMASYVKSIDNKHLLEVGLEGFYGESVPERKEINPGYEVGTDFISNNQVPEIDFATIHLYPDQWVPSADEAGQSAFVEKWVQAHIEDADKVLQKPILLSEFGKSSRSSGYSVDKRNNYYQTLYDFIYNSARSGGSCAGGLFWQLMSQGMDGFRDGYEVIFEEGQSTAGVIEQQSQKMSSLSSDNQSFRL 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1781 723 Pfam zinc-binding in reverse transcriptase 85 182 IPR026960 -
Sto1g1781 723 Gene3D - 280 406 IPR036397 GO:0003676
Sto1g1781 723 CDD RNase_H_like 283 401 IPR044730 -
Sto1g1781 723 Gene3D Glycosidases 407 715 - -
Sto1g1781 723 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 424 714 - -
Sto1g1781 723 SUPERFAMILY Ribonuclease H-like 280 409 IPR012337 -
Sto1g1781 723 SUPERFAMILY (Trans)glycosidases 424 705 IPR017853 -
Sto1g1781 723 Pfam Cellulase (glycosyl hydrolase family 5) 480 659 IPR001547 GO:0004553|GO:0071704
Sto1g1781 723 PANTHER - 424 714 IPR045053 GO:0004553
Sto1g1781 723 Pfam Reverse transcriptase-like 292 404 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1781 Sto-Chr1 26004171 26010134 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1781 425 714 Glycoside Hydrolase AT1G02310 56.610 3.28e-119 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1781 K19355 - gmx:100791612 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0373 6 4193181 4195349 Sto1g1781 1 26004171 26010134 CCT