Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g4004 ATGTATGGATCGGAGAAGCAAGCAAAGCAAGCAAGGGCAAGGGTAGTAGCAGTCCATCGTCGACGCCGAGCCGTTACGAGAACCAGAAGCGGCGTGACTGGAACACCTTCTGCCAATATCTTGGCAACCACCGGCCCTCCGCTGAGCCTGGGGATGTGCAGCGGAGCTCACGTGCTGGAGTTCCTCCGCTATCTGGATCAGTTCGGCAAGACCAAGGTCCACAATCCCCCCTGCCCTTTCTTTGGCATCCCTAACCCTCCCTCTCCTTGCCCCTGCCCTCTCCGCCAGGCATGGGGCAGCCTCGACGCCCTCGTCGGCCGCCTCCGTGCCGCCTTCGAGGAGCACGGCGGCGCCCCCGAGTCCAACCCCTTCGCCGCACGAGCCCTCAGGCTCTACTTGCGTGAGGTTAGGGATTTTCAGGCCAAGTCCAGGGGGCTAGCTAgggagtggaagtggaagtag 462 0.5996 MYGSEKQAKQARARVVAVHRRRRAVTRTRSGVTGTPSANILATTGPPLSLGMCSGAHVLEFLRYLDQFGKTKVHNPPCPFFGIPNPPSPCPCPLRQAWGSLDALVGRLRAAFEEHGGAPESNPFAARALRLYLREVRDFQAKSRGLAREWKWK 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g4004 153 PANTHER PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 43 151 - -
Sto13g4004 153 ProSiteProfiles ALOG domain profile. 25 152 IPR006936 -
Sto13g4004 153 Pfam ALOG domain 40 138 IPR006936 -
Sto13g4004 153 PANTHER PROTEIN G1-LIKE2 43 151 IPR040222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g4004 Sto-Chr13 40820271 40821229 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g4004 - - egr:104415369 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g4004 13 40820271 40821229 Sto13g3404 13 37248836 37249413 CCT
Sto8g0711 8 4471271 4472197 Sto13g4004 13 40820271 40821229 ECH
Sto13g3404 13 37248836 37249413 Sto13g4004 13 40820271 40821229 ECH
Sto12g1794 12 13643229 13646361 Sto13g4004 13 40820271 40821229 ECH
Sto13g4004 13 40820271 40821229 Sto13g4004 13 40820271 40821229 ECH